Gene
RNA
| Item | Value |
|---|---|
| gene id | G230700 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 3001195 ~ 3003117 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: non-muscle caldesmon-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU261846 | True | 988 | lncRNA | 0.45 | 2 | 3001195 | 3003117 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_02975008_02985278 | EFCAB1 | coding | upstream | 15860 | 2974588 ~ 2985335 (+) |
| CI01000054_02951289_02967370 | NA | coding | upstream | 33535 | 2950915 ~ 2967660 (+) |
| CI01000054_02824071_02824355 | NA | coding | upstream | 176553 | 2824025 ~ 2824642 (+) |
| CI01000054_02652696_02685815 | CALCR | coding | upstream | 315362 | 2652696 ~ 2685833 (+) |
| CI01000054_02613166_02614884 | TFPI2 | coding | upstream | 385737 | 2613058 ~ 2615458 (+) |
| CI01000054_03016199_03016501 | NA | coding | downstream | 12842 | 3015959 ~ 3016693 (+) |
| CI01000054_03424472_03425704 | NA | coding | downstream | 419937 | 3423054 ~ 3426433 (+) |
| CI01000054_03558982_03663042 | ADGRB2 | coding | downstream | 555865 | 3558982 ~ 3663042 (+) |
| CI01000054_03670684_03671857 | NA | coding | downstream | 667567 | 3670684 ~ 3672003 (+) |
| CI01000054_03707961_03761024 | ADGRB2 | coding | downstream | 704718 | 3707835 ~ 3761112 (+) |
| G230697 | NA | non-coding | upstream | 1176 | 2989009 ~ 3000019 (+) |
| G230705 | NA | non-coding | upstream | 37186 | 2933908 ~ 2964009 (+) |
| G230695 | NA | non-coding | upstream | 87619 | 2910956 ~ 2913576 (+) |
| G230693 | NA | non-coding | upstream | 134555 | 2864597 ~ 2866640 (+) |
| G230839 | NA | non-coding | upstream | 149213 | 2850455 ~ 2851982 (+) |
| G230856 | NA | non-coding | downstream | 53747 | 3056864 ~ 3057219 (+) |
| G231015 | NA | non-coding | downstream | 136276 | 3139393 ~ 3139663 (+) |
| G231209 | NA | non-coding | downstream | 356154 | 3359271 ~ 3359533 (+) |
| G231270 | NA | non-coding | downstream | 402100 | 3405217 ~ 3405519 (+) |
| G231273 | NA | non-coding | downstream | 407482 | 3410599 ~ 3410925 (+) |
| CI01000054_02289802_02330591 | SLC25A13 | other | upstream | 696813 | 2289802 ~ 2330981 (+) |
| CI01000054_01725792_01726688 | NA | other | upstream | 1274402 | 1725627 ~ 1726793 (+) |
| CI01000054_01650242_01665628 | PLEKHO1A | other | upstream | 1339630 | 1650242 ~ 1666115 (+) |
| CI01000054_01578022_01579167 | NA | other | upstream | 1419126 | 1578022 ~ 1579356 (+) |
| G229936 | NA | other | upstream | 1594065 | 1397080 ~ 1407130 (+) |
| G230689 | NA | other | downstream | 75385 | 3078502 ~ 3087392 (+) |
| CI01000054_03848427_03914231 | NA | other | downstream | 905334 | 3848427 ~ 3914231 (+) |
| G231863 | NA | other | downstream | 1404035 | 4407152 ~ 4450730 (+) |
| CI01000054_05608892_05634793 | RNF19B | other | downstream | 2619898 | 5608457 ~ 5634804 (+) |
| G232558 | NA | other | downstream | 2990543 | 5993660 ~ 6041863 (+) |
