XLOC_009910



Basic Information


Item Value
gene id XLOC_009910
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24834775 ~ 24897111 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00021716
CAGGTTTTCCACCTTCCCACAAGTCCCTGGCTTCTTATCCACACCAATAAGATAGGAGCTTCTCAGGCAGGGAGAGGCCAGGATGGGGTTGCAGACCAGAAAGAGAGAGTTTCAAGTTCAAGTGCAAGATTACATGTTCCTGATCAAAAAGAAGAGCTGAGCGGGAAAAGAAAGTGAGGTAACTAAGCCGAGGGGAGTCATCTGTATGCTGTTGTAACCTTAACAGCGCTCTCGTTCCAAATGAGAGCAAAAGTGAACAAGAGAATACAGGGAGAGAAATCCACCCCTCTGCTTTCTCTCTGCCACTTCTCTCCTC
>TCONS_00021934
CCACAAGTCCCTGGCTTCTTATCCACACCAATAAGATAGGAGCTTCTCAGGCAGGGAGAGGCCAGGATGGGGTTGCAGACCAGAAAGAGAGAGTTTCAAGTTCAAGTGCAAGATTACATGTTCCTGATCAAAAAGAAGAGCTGAGCGGGAAAAGAAAGTGAGaagCTGGGACGCATCACCTGAGATCAGCTCTGGTTCTCCTGAGGGACTACAGGTGTTCACTCCTCATGCCACATCAGCAGACCAGCTGGTCAGTGATCAGAGGTGACCAGACACTTAGATCAGACCTACAGAGTGTGGAGCGGATGGACATTTTCTCCTTTTCTGTTTCGTACGGTGTCTTTGTCTCATCAGGTTCAACTTTTTTCTAGTCGGACACGTTTACGCATCCTTCATGCAGCTTGTGAATGGTTTTTTTCATCTTAGACGTTTAGTTTTTGACAGACTTTACACACCGACATGCACTTTTTGTCGCCGCAAAGGTTGACATTGTCAAAGTCTGCATGTTCCTGATGCCACGATAAGGTAGAGCATGTCATTCTGGATTTTTGCCATTCGCCCCAGCTACATCATCATGCCATTTTTAGCACTTGTGTTTGTCAGACAGTTTATTGTAGGGCTTGTGATTGACACACCTGTGCACATGCATGTTTGTAAGACATTtatgaaatgcatttaataaaagcGTTTATTTTTAAGACAATAGAACCA
>TCONS_00019776
GGAAGCGGAAGAGCGAGGTGTCTGTGAGGAGGAATAATGAAAAGGGAGAGAGagatggaaagagagagagagagaaggagggaGGGGTAAAAGAAGAGAGCAGGACTGAGGAGGGTGGACTGGCAGAAACATGAAATACGAGAGGGAGAAGAGTAAAGTAGGAGAGGAGCCCGTAAGAGGAGAAACGAGGGATGGCTGACCTGGAAGTGGGCAAATTCGGGGGGAAAGGAAGCCACCGTTCTCATCCAACGCTTGCTGaagCTGGGACGCATCACCTGAGATCAGCTCTGGTTCTCCTGAGGGACTACAGGTGTTCACTCCTCATGCCACATCAGCAGACCAGCTGGTCAGTGATCAGGTAACCAAACGTCTCTGTCCCAACATCACTCTCCAGCCTTTGTCTTCTTTACCtacaaaacagacacacacacacacacacacacacacacacacacctgagctgAAACTCAGCTATGAATCGAAACCTTAAACTCTTAAAAGCCTGTTTTCAGCCTATTCAGTGGCGAAGCCTATGCTTATGTTCCTATGAGAACAGCTTTAAAGCCCAGCAGAAATATGAAAGATATGAACCAGCTATTATCA
>TCONS_00019778
CCTGGATTGATTAACAGAAGATTGCGGCAAACGCGGGGAGTAATATTTTCCAGCGCTTTATCATTTTGCTAGCCTGATGCTCTGTGGCTTCTCACCCTGCTTGAGATTCTGACCCTCCCCCTTCGTTTCCCATTCCTTCCTACTCGCGGCTCTCTCTTCTCCTCTCCCCTTTGCCCCCTCCCTGCTCCCTCCGTCTCTCACACACATTTCCTCTctcagacactcacacacacacgagcgCACAGACTGCGAAAGAAGGGGGCAGGGGGAGTAGTGGAGACACGATGCCTGAAAAAACGTGAGCGAgggaaagagagagcgagagagagagaaagagagagagagaatagggATGTTGAAGGCTAGGGATGGTTTGAGAGGGAAAAAGCAAGAGAGTTTGAGATTGGGGACAAGGGATGCGAGTGCCTGAGATGCTGAGAGAAGACAGAGAGTGATGGAGGCAGAAAACGTGAGTGTGTGTCTGACACTCGTGGTGCTGTAGACTATGGGATTGCTGTAGGGGAGAGGTGACCAGACACTTAGATCAGACCTACAGAGTGTGGAGCGGATGGACATTTTCTCCTTTTCTGTTTCGTACGGTGTCTTTGTCTCATCAGGTTCAACTTTTTTCTAGTCGGACACGTTTACGCATCCTTCATGCAGCTTGTGAATGGTTTTTTTCATCTTAGACGTTTAGTTTTTGACAGACTTTACACACCGACATGCACTTTTTGTCGCCGCAAAGGTTGACATTGTCAAAGTCTGCATGTTCCTGATGCCACGATAAGGTAGAGCATGTCATTCTGGATTTTTGCCATTCGCCCCAGCTACATCATCATGCCATTTTTAGCACTTGTGTTTGTCAGACAGTTTATTGTAGGGCTTGTGATTGACACACCTGTGCACATGCATGTTTGTAAGACATTtatgaaatgcatttaataaaagcGTTTATTTTTAAGACAATAGAACCA

Function


GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0034457 Mpp10 complex cellular_component
GO:0044452 obsolete nucleolar part cellular_component
GO:0005730 nucleolus cellular_component
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097225

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00021716 False 316 lncRNA 0.48 2 24834775 24842312
TCONS_00021934 False 711 lncRNA 0.44 4 24834791 24897111
TCONS_00019776 False 603 mRNA 0.49 2 24842662 24873020
TCONS_00019778 True 974 lncRNA 0.47 2 24896017 24897111

Neighbor


gene id symbol gene type direction distance location
XLOC_009909 si:dkey-79d12.4 coding upstream 93375 24733741 ~ 24741400 (+)
XLOC_009908 smg9 coding upstream 101454 24721556 ~ 24733321 (+)
XLOC_009907 ywhabl coding upstream 138884 24681177 ~ 24695891 (+)
XLOC_009906 si:dkey-56f14.7 coding upstream 188708 24626448 ~ 24646067 (+)
XLOC_009905 NA coding upstream 260974 24565734 ~ 24573801 (+)
XLOC_009912 dre-mir-125a-1 coding downstream 1060 24898171 ~ 24898253 (+)
XLOC_009913 BX539313.2 coding downstream 8445 24905556 ~ 24918957 (+)
XLOC_009914 fpr1 coding downstream 74606 24971717 ~ 24974700 (+)
XLOC_009915 si:dkeyp-84f3.5 coding downstream 81092 24978203 ~ 24992830 (+)
XLOC_009916 znf1035 coding downstream 114883 25011994 ~ 25038855 (+)
XLOC_009904 CT867948.1 non-coding upstream 310699 24516092 ~ 24524076 (+)
XLOC_009903 NA non-coding upstream 626872 24198479 ~ 24207903 (+)
XLOC_009902 NA non-coding upstream 806157 24019108 ~ 24028618 (+)
XLOC_009889 CR533578.1 non-coding upstream 1227423 23607231 ~ 23607352 (+)
XLOC_009929 NA non-coding downstream 310507 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 322324 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 336842 25233953 ~ 25235093 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location