G232116


Basic Information

Item Value
gene id G232116
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5102226 ~ 5181459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU263389
GTGTGTGTATATATATATATATATATATATATATATATATATATAAAATATAAAATCAATCATAAAGGCAGTCCCATTTAAAAACTCTTATGCTGCATCTGATTGCTATATGCCTTCCCTTTTTCTCTCAGTGTTCCCTCTCACTCTTGTTTTTGTGTCTCTCATATTCACAGAGAAAATAGATTGTGAATGTTGAGAGTGCATCACATGCCATTATGCAAATTAAGGGTAGAAGAATTTCATGCGTAATGTGAGTTCTTTTCTTTAAGCATATACAGACTCTTTTGACTTTCTCCACATTCAAAATTTCAATGTTTATACTTAAATATACTGTTATATATAAATAAAATATGCTTTTTATCAGTGACGCACGGCATGTCATGCGCAAATCCATGTTGATTTTGTTATTCCAACCTTCCGTCACCATGGCGACATGAAAATCCCAAAGCATTTTTCTCTTGATGGCATTTAGGTGCTCTTTTCATTTATTTTCCTATGACTAATATTATTCAATAATTTACAAATTCTTTGCAGTATTTTTTTCTTATTCAAAATTCTGTGAATTTTATATAAAATATTAATCTGTTTATATATTATGTATATCTGTATATCATATGTATTATATATGTCACTGCATGCATGTGAAAACAGACGTCAACACACATTATACGGTACATGCACACATTGCCACACTAATCTAGTAAAATGGCTTTAGAACTGCCTTTTATCTTCTGCATTATAACAAATGGCGCAAGTACCTCAACATCTCTTGCTCATTTTGAAATCTTGCTCTTCCTCATTATTAGACAGCCAGTGCTATTGTAATACATGTTTGAATGTGTGTGCGTTTTCAGCTTCAGACTGTTCAAAACATTACTCGTTCAAGTCGATCAATTATGTGAAAACTGTATGCGGCGAACAAAACACAAGCCTGGATGGCCTGTGTTGACAGTTTGCACGTGACATTTATCCTTTTTCTTGACATCACGAAATGAATGCTGTATGTTACCATCTCTTGAATGTATATTCTTCTGGGGGCCACATTTGCAATTCATTGTCACGAAGGGTGACATTTTAAGTTGAAAATCCCTTTTTAGATGCCAGCCTGTCTCATACAGTAGATAATCTTCAGCTGCCATTGTTAAAGGAGCAGTTTTGACATGCCTTCTCCTCTTCTGTCAGAATCTGCCACCAAAACTGTTGTTTACATTCAGCCTTTGACAGTCCATTTCAAAGTGGATTAGGGGATAAGGGCGACCTGAGCGAGTTAATTTCCGTTTGCCGCCATAGTGAAAGGCCTGGGATGATGAGGATTTTGTCTGAGATTCTGTCTAGAGGGTCATGCTCTTTCCCATTTTGCTGGGGCAGAATGTAATTAGGGGTGGTATGATGGTAGAAATGTGTCAACCGGTTGACATTCTGCTATAGCATTTATACCACAACATATCTGGGGTATTTCAATTTAGTCTGCTTTTAACCAAAGTGTTAGATTTTGGATGCTGTTCTTTTGAACTTTCTACTCATCAAATAATCCTGATAAAATAGCACTGTTTCCACAAAAATATTAAGCAGCACAACTGTGTTCAACATTGATAATAAGAAATGTTTCCTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCAGTAAAGCGTTCTTACTGCAGATCCAGACAGATCAAGCATTTTGCATTAAGAAAGGAAGAAATATATATTGCAAACTGACTCTTTCTCAACACAAAAAAAAATTATAAAAATGTGTTCTCATCTCTTGCAGAAGTGGTACAGTCAAAATGCTACATCTGTAACTGCATGAGAGGAGAATATATGAGTCCATAAGTTTCCAGCTGACATGTTGGAATAGTACTCTTTGCTTTGTAATGCTTTATTTAACATCACAATGACATAACAAATGGAATACTCCTTGTCAGATACACGAATGATTAAGTTTTGATGCCACTACTGGGAAATAACCTGATTTATTAATAAAGTCTTGTAAACGTGGTTTACTTGCATTGCTGGGTTATGGTTTGCATGTAAACCAGGACAACTGGTTAATTCAATAAGCTGATATTTGTGAGTTATCAGCATGGTGTGCATGTAAACATGCTCATTAACTTATCTGTCATGAATAAGGTTACCTTTTGGTCTAAAATGGAAAAGAAAACCATTAAAGTATAAAATATTTATTACTAATAATTATAATATTGACATAAAGGTATTCATATTTAGTTTTTATAATAAATATTTAGTATTTAAAGTCACTTTAAATTCATCAATGCATTTTAGTACATAATATATTAAAGGATTAGTTCACTTCAGAATTCAAATTTCCTGATAATTTACTCACCCCCATGTCAACCAAGAAGTTTATGTCTTTCTGTCTTCAGTTGAAAAGAAATTAAGGTTTTTAAGGAAAACATTCCAGGATTTTTCTCCAAATAGTGGACTACAGTGGCTACCAACGGGTTGAAGCACTAGCTCTGCGATGCGCCACGTATTACGTAATCAAGTTGGAAAGGTCACGCGTGACTTAGGTGGAAGTACCGAGTAAGTGTTTACAAAGTGAACGTGCGAAGACTAAGTCAAACACCCTTTACAAAAAAAATGTCGGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263389 True 2622 lncRNA 0.34 2 5102226 5181459

Neighbor

gene id symbol gene type direction distance location
CI01000054_04962081_04977729 NA coding upstream 124289 4961930 ~ 4977937 (+)
CI01000054_04924205_04945546 NA coding upstream 156385 4924159 ~ 4945841 (+)
CI01000054_04658039_04659082 NA coding upstream 442525 4657991 ~ 4659701 (+)
CI01000054_04453321_04456780 ILF2, ILF2.L coding upstream 645118 4453321 ~ 4457108 (+)
CI01000054_04372172_04374454 NA coding upstream 727325 4371425 ~ 4374901 (+)
CI01000054_05402279_05408977 TRAPPC3.S, TRAPPC3, TPPC3 coding downstream 219988 5401447 ~ 5409085 (+)
CI01000054_05409518_05413525 NA coding downstream 227843 5409302 ~ 5413987 (+)
CI01000054_05538535_05543989 COL8A2 coding downstream 355949 5537408 ~ 5545034 (+)
CI01000054_05567094_05576916 PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 coding downstream 385635 5567094 ~ 5577023 (+)
CI01000054_05579068_05592326 ANLN coding downstream 397609 5579068 ~ 5592503 (+)
G232094 NA non-coding upstream 209184 4892757 ~ 4893042 (+)
G232077 NA non-coding upstream 265708 4836279 ~ 4836518 (+)
G232052 NA non-coding upstream 325239 4776670 ~ 4776987 (+)
G232050 NA non-coding upstream 329247 4772738 ~ 4772979 (+)
G232048 NA non-coding upstream 342009 4759983 ~ 4760217 (+)
G232293 NA non-coding downstream 78537 5259996 ~ 5260762 (+)
G232368 NA non-coding downstream 175782 5357241 ~ 5357672 (+)
G232379 NA non-coding downstream 218909 5400368 ~ 5401112 (+)
G232443 NA non-coding downstream 237173 5418632 ~ 5418869 (+)
G232467 NA non-coding downstream 292586 5474045 ~ 5474333 (+)
G231863 NA other upstream 651496 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 1188680 3848427 ~ 3914231 (+)
G230689 NA other upstream 2014834 3078502 ~ 3087392 (+)
CI01000054_02289802_02330591 SLC25A13 other upstream 2797844 2289802 ~ 2330981 (+)
CI01000054_01725792_01726688 NA other upstream 3375433 1725627 ~ 1726793 (+)
CI01000054_05608892_05634793 RNF19B other downstream 441556 5608457 ~ 5634804 (+)
G232558 NA other downstream 812201 5993660 ~ 6041863 (+)
CI01000054_06305908_06312122 NA other downstream 1122848 6305908 ~ 6312163 (+)
G232659 NA other downstream 1193391 6374850 ~ 6375894 (+)
G232870 NA other downstream 1706453 6887912 ~ 6888503 (+)

Expression


Co-expression Network