Item | Value |
---|---|
gene id | G232379 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000054 |
NCBI id | null |
chromosome length | 13006764 |
location | 5400368 ~ 5401112 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU263682 | True | 435 | lncRNA | 0.40 | 4 | 5400368 | 5401112 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000054_05145255_05217807 | CSMD2 | coding | upstream | 182557 | 5145111 ~ 5217811 (+) |
CI01000054_04962081_04977729 | NA | coding | upstream | 422431 | 4961930 ~ 4977937 (+) |
CI01000054_04924205_04945546 | NA | coding | upstream | 454527 | 4924159 ~ 4945841 (+) |
CI01000054_04658039_04659082 | NA | coding | upstream | 740667 | 4657991 ~ 4659701 (+) |
CI01000054_04453321_04456780 | ILF2, ILF2.L | coding | upstream | 943260 | 4453321 ~ 4457108 (+) |
CI01000054_05402279_05408977 | TRAPPC3.S, TRAPPC3, TPPC3 | coding | downstream | 335 | 5401447 ~ 5409085 (+) |
CI01000054_05409518_05413525 | NA | coding | downstream | 8190 | 5409302 ~ 5413987 (+) |
CI01000054_05538535_05543989 | COL8A2 | coding | downstream | 136296 | 5537408 ~ 5545034 (+) |
CI01000054_05567094_05576916 | PTP4A1, PTP4A2.L, TP4A2, PTP4A2B, PTP4A2 | coding | downstream | 165982 | 5567094 ~ 5577023 (+) |
CI01000054_05579068_05592326 | ANLN | coding | downstream | 177956 | 5579068 ~ 5592503 (+) |
G232368 | NA | non-coding | upstream | 42696 | 5357241 ~ 5357672 (+) |
G232293 | NA | non-coding | upstream | 139606 | 5259996 ~ 5260762 (+) |
G232116 | NA | non-coding | upstream | 218909 | 5102226 ~ 5181459 (+) |
G232094 | NA | non-coding | upstream | 507326 | 4892757 ~ 4893042 (+) |
G232077 | NA | non-coding | upstream | 563850 | 4836279 ~ 4836518 (+) |
G232443 | NA | non-coding | downstream | 17520 | 5418632 ~ 5418869 (+) |
G232467 | NA | non-coding | downstream | 72933 | 5474045 ~ 5474333 (+) |
G232499 | NA | non-coding | downstream | 226460 | 5627572 ~ 5627795 (+) |
CI01000054_05696772_05708538 | NA | non-coding | downstream | 293225 | 5696093 ~ 5708637 (+) |
G232519 | NA | non-coding | downstream | 437171 | 5838283 ~ 5838874 (+) |
G231863 | NA | other | upstream | 949638 | 4407152 ~ 4450730 (+) |
CI01000054_03848427_03914231 | NA | other | upstream | 1486822 | 3848427 ~ 3914231 (+) |
G230689 | NA | other | upstream | 2312976 | 3078502 ~ 3087392 (+) |
CI01000054_02289802_02330591 | SLC25A13 | other | upstream | 3095986 | 2289802 ~ 2330981 (+) |
CI01000054_01725792_01726688 | NA | other | upstream | 3673575 | 1725627 ~ 1726793 (+) |
CI01000054_05608892_05634793 | RNF19B | other | downstream | 221903 | 5608457 ~ 5634804 (+) |
G232558 | NA | other | downstream | 592548 | 5993660 ~ 6041863 (+) |
CI01000054_06305908_06312122 | NA | other | downstream | 903195 | 6305908 ~ 6312163 (+) |
G232659 | NA | other | downstream | 973738 | 6374850 ~ 6375894 (+) |
G232870 | NA | other | downstream | 1486800 | 6887912 ~ 6888503 (+) |