G232432


Basic Information

Item Value
gene id G232432
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 5404061 ~ 5409322 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU263742
TTCATAGTCAATGATTTATTCAATCGGATTATGATACACGGCTAAATAAATTAAACCTTCTCTGCCTTATGTCCGAGTTAAACGCAATAAGAAAAACAAAAAAGACAAATACAAAAAGAGAGTATTGTCCTGAAATACAAAACATGGACCAGGTGGAAAGAACATGCCATCCTTGTTGACACATCGAGAGAATCTTCTCGACGGTGAACTCTCATTGCAATACTTACAATGTTTTATTGTATCATAAGAAGAATTGGTTGGTCTTCCCTTGACCAAAATGGAAGTTTTTGGTTCCCAGCCCAACACAGAAAAGTCTCACGGGTCAAAGGTTAGTGTCTCTCAGCCTCATTCATCCCCAGCTGGCATGTTCTCCTCGATCCTTTTGATGAACTTCATCCGAATTTCTGTCACATTGTCACCTCTTAGCGTGTCCTGAGCGAATCGCACATCCACCGCCATTTGAACCATTTCAAGAGCTCCTCTCAGCACTCCACAGAGCAGGCTGGAGTAGACCAGATTACTGTGGTTGTCAGGAAGCTCTACAAAGTCCACCAGGGGGTTGCTTTCGAGGATAAGAGAGAACTCGTCTCCAGCAGGACTCCAGTTGGTCACGCTGGGGGTGATACCCAAGTACATCTTGAAGGCTACCTTTGCAATGACATCGGCCGTTTCTCGGAAATCGTGACACCTCCCCACGCTGGACCGAGCCAAGAAGTCCTCAATCAGACGCACTCCGATATTGTATCCCATTTTATCCAGTTGTTTGTTGACCTCCTCATCATTTTCATAGTCTTTACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU263742 True 799 lncRNA 0.44 4 5404061 5409322

Neighbor

gene id symbol gene type direction distance location
CI01000054_05341497_05372926 ANGPT2B coding downstream 31135 5341110 ~ 5372926 (-)
CI01000054_05292456_05317677 NA coding downstream 85070 5292299 ~ 5318991 (-)
CI01000054_04671351_04681181 PEF1 coding downstream 722700 4670151 ~ 4681361 (-)
CI01000054_04463229_04486856 DLGAP3 coding downstream 917205 4462888 ~ 4486856 (-)
CI01000054_04411682_04448848 NA coding downstream 955213 4411429 ~ 4448848 (-)
CI01000054_05685529_05686880 NA coding upstream 276178 5685500 ~ 5687414 (-)
CI01000054_05711250_05711861 NA coding upstream 301300 5710622 ~ 5712639 (-)
CI01000054_05822181_05823458 ZN706, ZNF706, ZFP706 coding upstream 412846 5822146 ~ 5823684 (-)
CI01000054_05827691_05828736 WDYHV1 coding upstream 418071 5827393 ~ 5830717 (-)
CI01000054_05853193_05858118 WISP1A coding upstream 443753 5853075 ~ 5858118 (-)
G232406 NA non-coding downstream 45053 5357436 ~ 5359008 (-)
G232275 NA non-coding downstream 183565 5211878 ~ 5220496 (-)
G232266 NA non-coding downstream 207510 5195936 ~ 5196551 (-)
G232251 NA non-coding downstream 227283 5172829 ~ 5176778 (-)
G232241 NA non-coding downstream 234370 5153419 ~ 5169691 (-)
G232437 NA non-coding upstream 2245 5411567 ~ 5412115 (-)
G232439 NA non-coding upstream 4902 5414224 ~ 5414542 (-)
G233356 NA non-coding upstream 64823 5474145 ~ 5474392 (-)
G233420 NA non-coding upstream 341024 5750346 ~ 5751278 (-)
G233392 NA non-coding upstream 350977 5760299 ~ 5852707 (-)
G232274 NA other downstream 194821 5206199 ~ 5209240 (-)
G231645 NA other downstream 1421238 3981847 ~ 3982823 (-)
G230908 NA other downstream 2340718 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 2543488 2857402 ~ 2860573 (-)
CI01000054_06629482_06641861 TRIQK other upstream 1218760 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 1756113 7165435 ~ 7169539 (-)
G235216 NA other upstream 3838717 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 4073825 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 4453999 9863321 ~ 9867212 (-)

Expression


Co-expression Network