XLOC_009919 (si:ch211-261d7.3)


Basic Information

Item Value
gene id XLOC_009919
gene name si:ch211-261d7.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25095483 ~ 25104993 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019788
ATATTCCTGCGACCATTTGGGCTGTGTGTACATTTAGGATTTTAACAGGTTAGCTTTGCGCCTGTTCACTTTAAATCGTGTTTATGTCGTGTTATAAACTAACTGAACATGTACCACAGTCATTCGATGTGGCTGTGGATTAATTTTTCGAGAATATACGTTAGTCGTTATGCGGACACGTCGCATTTATGACTTTAACGCGAACAGCCGTACGTTAGCTGCTCGAGAAGAGCGAGTGGTGGCTAACGTAATTTATGCGGAATGCGCATCCATTGCGGATGTGGTGCAGAATAAATGCGCATTGCTGCGACACAGTCATTAAAATGAGGCGATGAATGCCTTGCCATGGAACAGCATGGTGGCTTTTCACCCTTCTTGTGAATGGCACGCTGTCCAGCCGTCACGTCGGTGTGTCTGTAAAGCACTACATATCCATGACTGAGTACTACGAGGAGGGGGGCTTGCTGTACGAGCACTCACCTCCCATGCACATCAAAGTGGAGTCTCCAGAGGGTCCCTTTGGAGGCGGGGTGTCCGAGGACGGTTTCCCCAGAGAAGATGACGACTCTGAGGCCAGCTGTGACCATCAGAACGGCGGGTTGCCAAGCAGCCTGCCCTTTAATGTGGTGGTCGTGCACCCCAACATAGTCGCTCCTGGCATGTCTTCGGATGATCTCATCCC
>TCONS_00019789
ATATTCCTGCGACCATTTGGGCTGTGTGTACATTTAGGATTTTAACAGGTTAGCTTTGCGCCTGTTCACTTTAAATCGTGTTTATGTCGTGTTATAAACTAACTGAACATGTACCACAGTCATTCGATGTGGCTGTGGATTAATTTTTCGAGAATATACGTTAGTCGTTATGCGGACACGTCGCATTTATGACTTTAACGCGAACAGCCGTACGTTAGCTGCTCGAGAAGAGCGAGTGGTGGCTAACGTAATTTATGCGGAATGCGCATCCATTGCGGATGTGGTGCAGAATAAATGCGCATTGCTGCGACACAGGTAATGTTGGCCTTCATATTTACGCTTTTCGCGTATTTAAACATTCGGTTAAATGTGCATCCAACTATATTATCCATACATTCTTTGTTTTTAATGTCTCCTCTGTAGCCTCGGGTTTGTTCTCGTTATTTCAAGATTAGCAGAATAGCTTTTGGATTTCTGCATGTTATGAATGATAAATATACATAATGTCAGAATATCAGAAGAACGTCAACGAGTTTCGCTTTTGGATGAAAGCCACAGGTTTTTGTTTTCCTGCTCTGTTAAGATGCACAACAAACACGTCGCATTTTTTTCGCTAAATCCATCTTAATTGCCTCATAAAATGACACGCTAACTTACTGCTGTTCTCCAgcgagtgtgtgttttctgtggcTGTGTGTTACTGTCCATGTTAGTCATTAAAATGAGGCGATGAATGCCTTGCCATGGAACAGCATGGTGGCTTTTCACCCTTCTTGTGAATGGCACGCTGTCCAGCCGTCACGTCGGTGTGTCTGTAAAGCACTACATATCCATGACTGAGTACTACGAGGAGGGGGGCTTGCTGTACGAGCACTCACCTCCCATGCACATCAAAGTGGAGTCTCCAGAGGGTCCCTTTGGAGGCGGGGTGTCCGAGGACGGTTTCCCCAGAGAAGATGACGACTCTGAGGCCAGCTGTGACCATCAGAACGGCGGGTTGCCAAGCAGCCTGCCCTTTAATGTGGTGGTCGTGCACCCCAACATAGTCGCTCCTGGCATGTCTTCGGATGATCTCATCCCAATTGACCAAAGCAGAGGTGTGTCTTCAGCATTAGCAGCAGGAGGTGTAGGGAAAAGGAAGAGCCGCTTTAGTGGGGCAGAGCTGGAGGTGTTGGTGTCAGAAGTGACCCGTTGTGAAGGGGAGCTGTTCGGTCCAGCTGGGAGGCTCCGGCGCCGAGAACGAGAGCGCATTTGGGCCGGGATACTTGAGCGTGTCAATGCTGTGTCCAGAGTACCACGGACACTAAGAGAAGTGAAGAAACGCTGGGATGACCTGAAGAGACGTAACGGCGGGAGACTGGCTGACGCGAGGCACCGCTCCTGCTACCTGCCGTCCAGCAGAGGGGCCACAATTATGGGAAGACCAACTCCTACTAGTCCCAGACTGCAGCAGTCTCGCCAAAAGCAGAGTACCAGAGGAAAAGCCAGTTACAGTTGCTCGTCAGACACTGATCCAGTTGTGGTTGGCGATGGTTCTGAAAGAGATGGTTTTGAAAAGGAGGAAGAAGCAGGCGAGCCGGAGGGTGACGATGGAGATGACTGTGAGGGTGTGGAGAACAGTATGGAGGACAAACTGGGATTGGGCCTGGGTTTGGGAATAGTACCACCTCCCACATCAGAGCGCTGGTTACCTCCTTCACCCCTTTACAGTGCTCCTTTCCTCAACGGGACCCCTCAGCCAAGCCCAGAACCATCCTTAGGGACCCACCAGGGCCCACTGGAGCCTCCTCCTCCACGCTCCTCCTGGCTGGAAGATGAACTGCGCGGACTGGGAGAAGCAGCCATGCAGCTTGGCGACCGCATGGAGCAAAACCTGCGAGAATTTGGAGAAGGCTTTAGGCGAGATATGCGAACGCTTGTGGCTTCCCAAGAGGCCCTTACAAATAGCTTGCAGCAGAATAATGTACTTTTGCAGCGTCTGTTGGGTCTGCTTGAGATGCAGCATCAGCCGCCCCCTCaacaaattccacaacaacaatTGCAGCAACCTGCAGTTCAGCAGCAACAGGACCCTCCACAAGAGCAGCCTTATCAACAACTGTTATTGGCACAGGAGCATCCGCAGCTCGAGCAGCAAATCCCAGCAACTGTCCCACCTCTTCCACCTCCTCCAGATATTTTAGATGGTACTCGGCACTCAGAACCACCGACTGAGATAAACGGAGTAACTGAACAGCCACGTCACGAGCTCAGGCGAAGACGCAGACGTTGATGTGCGAACAGAACTGTACTGTACAGTTgcagtcaattatttatttaaagcaatgttttataaGGATAATTAGTTGCAGATTGTGCCATGTCATTGCCGCCACTTTTTATGTTATGCCTGTCGCAGATATATTATAAGTGTATAAGATGTACACCAAATAGCTCAGAGCTATTTCTTTATCTAAATTGACTTCTAAGCTCTTGTTGCTGATAGCAAACTACTAAGGTTTTATGGATCTGCTTGCTTGCGTTCATGTATAAAAaatgcaagtttaaaaaaaatgatcttGGCAGGCTTAAATACTCTTCAATGTTAATGCTGTGGAGAGTGAGACGTCACATTTCTTCTTTCACATGATCACTGCAAAAtgacattttacttttttattatcgCCGTTTAAGGAAATA

Function

symbol description
si:ch211-261d7.3 Predicted to act upstream of or within apoptotic process. Predicted to be active in nucleus. Orthologous to human MYPOP (Myb related transcription factor, partner of profilin).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-179 Predicted to act upstream of or within apoptotic process. Predicted to be active in nucleus. Orthologous to human MYPOP (Myb related transcription factor, partner of profilin).

Ensembl:

ensembl_id ENSDARG00000097284

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019788 False 682 processed_transcript 0.50 2 25095483 25096562
TCONS_00019789 True 2679 mRNA 0.48 3 25095483 25104993

Neighbor

gene id symbol gene type direction distance location
XLOC_009918 si:dkeyp-84f3.9 coding upstream 15007 25074029 ~ 25080476 (+)
XLOC_009917 im:7147486 coding upstream 22653 25066880 ~ 25072830 (+)
XLOC_009916 znf1035 coding upstream 56628 25011994 ~ 25038855 (+)
XLOC_009915 si:dkeyp-84f3.5 coding upstream 102653 24978203 ~ 24992830 (+)
XLOC_009914 fpr1 coding upstream 120783 24971717 ~ 24974700 (+)
XLOC_009920 zgc:66448 coding downstream 2351 25107344 ~ 25115472 (+)
XLOC_009921 si:ch211-261d7.6 coding downstream 11834 25116827 ~ 25124951 (+)
XLOC_009922 zgc:92590 coding downstream 21942 25126935 ~ 25130075 (+)
XLOC_009923 CU062628.1 coding downstream 28342 25133335 ~ 25135212 (+)
XLOC_009924 znf576.1 coding downstream 32490 25137483 ~ 25163213 (+)
XLOC_009913 BX539313.2 non-coding upstream 176526 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 197230 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 198372 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 214265 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 521682 24565734 ~ 24573801 (+)
XLOC_009929 NA non-coding downstream 102625 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 114442 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 128960 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 236423 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 236731 25341724 ~ 25341811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05684713_05689894 NA coding CI01000027 null 5684595 ~ 5689916 (+)