Gene
RNA
| Item | Value |
|---|---|
| gene id | G233392 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 5760299 ~ 5852707 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU264840 | False | 2128 | lncRNA | 0.51 | 4 | 5760299 | 5783273 |
| TU264836 | False | 1263 | lncRNA | 0.41 | 4 | 5782960 | 5852707 |
| TU264838 | True | 4521 | lncRNA | 0.47 | 11 | 5782960 | 5790110 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_05711250_05711861 | NA | coding | downstream | 47660 | 5710622 ~ 5712639 (-) |
| CI01000054_05685529_05686880 | NA | coding | downstream | 72885 | 5685500 ~ 5687414 (-) |
| CI01000054_05341497_05372926 | ANGPT2B | coding | downstream | 387373 | 5341110 ~ 5372926 (-) |
| CI01000054_05292456_05317677 | NA | coding | downstream | 441308 | 5292299 ~ 5318991 (-) |
| CI01000054_04671351_04681181 | PEF1 | coding | downstream | 1078938 | 4670151 ~ 4681361 (-) |
| CI01000054_05853193_05858118 | WISP1A | coding | upstream | 368 | 5853075 ~ 5858118 (-) |
| CI01000054_05956278_05957354 | FAM206A | coding | upstream | 103406 | 5956113 ~ 5957354 (-) |
| CI01000054_05990266_06191955 | GABBR2 | coding | upstream | 137559 | 5990266 ~ 6191955 (-) |
| CI01000054_06210877_06211356 | NA | coding | upstream | 358100 | 6210807 ~ 6211475 (-) |
| CI01000054_06222549_06234979 | GALNT12 | coding | upstream | 369760 | 6222467 ~ 6235072 (-) |
| G233420 | NA | non-coding | downstream | 9021 | 5750346 ~ 5751278 (-) |
| G233356 | NA | non-coding | downstream | 285907 | 5474145 ~ 5474392 (-) |
| G232439 | NA | non-coding | downstream | 345757 | 5414224 ~ 5414542 (-) |
| G232437 | NA | non-coding | downstream | 348184 | 5411567 ~ 5412115 (-) |
| G232432 | NA | non-coding | downstream | 350977 | 5404061 ~ 5409322 (-) |
| CI01000054_06283619_06286512 | NA | non-coding | upstream | 427837 | 6280544 ~ 6286767 (-) |
| G233539 | NA | non-coding | upstream | 464614 | 6317321 ~ 6325541 (-) |
| G233581 | NA | non-coding | upstream | 560376 | 6413083 ~ 6413708 (-) |
| G233585 | NA | non-coding | upstream | 565898 | 6418605 ~ 6418858 (-) |
| G233590 | NA | non-coding | upstream | 570074 | 6422781 ~ 6423081 (-) |
| G232274 | NA | other | downstream | 551059 | 5206199 ~ 5209240 (-) |
| G231645 | NA | other | downstream | 1777476 | 3981847 ~ 3982823 (-) |
| G230908 | NA | other | downstream | 2696956 | 3057648 ~ 3063343 (-) |
| CI01000054_02857402_02860451 | NA | other | downstream | 2899726 | 2857402 ~ 2860573 (-) |
| CI01000054_06629482_06641861 | TRIQK | other | upstream | 775375 | 6628082 ~ 6642160 (-) |
| CI01000054_07165957_07169539 | HEYL | other | upstream | 1312728 | 7165435 ~ 7169539 (-) |
| G235216 | NA | other | upstream | 3395332 | 9248039 ~ 9248538 (-) |
| CI01000054_09483912_09484282 | MRPL36 | other | upstream | 3630440 | 9483147 ~ 9484282 (-) |
| CI01000054_09864693_09866871 | PPP1R11 | other | upstream | 4010614 | 9863321 ~ 9867212 (-) |
