G232606


Basic Information

Item Value
gene id G232606
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6134517 ~ 6136029 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU263930
TGGAGTTGTAATATGTACACTTTAAAGCTGCAGTCCGTAACTTTTTTTCGTTAAAAGTTATCCAAAATCAATTTTTGAGCAAGTACATAACCAGCCAGTGTTCAAAACTATCTCCTCACCTTAGCCTGATTCACAACGGTAAGCTTGTAATAATGTTTTCTAATTCTAGTGGTACTGGTAGGTTTCCATGGGAAATTCGAGTATGCTGCCGTTCGTCTTTGTGTCATTATGTCACGTCTGTTTACATAAAAAACGAGTCCCAGCTAGTAGGCTATATGGCATGTGAGGATGCTGCAGGTGGCGGATCATTTACAGCCTTTTCTCACGGCAGCTCTAATAATTAAACTTATTTTGATGGTGGATTGTATGGTATGACAAATTAACGTTAGAGATTAGACTGTACATAAATTGAAATCTACAGGTAACTCTAATACACACTAAATACACCTAGTCACGCAATGCTGATGTTTTTAACATTAACAATTTGAAAACAAAGTATAACAATAATTATAACTCACACGGTTTAATTTTATATGAGCTAAGCGATCATTAGATTTAATCACCATACTTCAATCATCATACTTCCAAGACTACAATCTGTGATTCAAAAGTACAGTATCCACCAGTGCAGTGACTGACAGCCACACATTCTCCTCAAAACATTAGATTCATCCGCGCTGGGGAGCCGTGCCGATGCAATACCCACGTATAGATGATAATTCTGCAAATAACTGCAATTGCAGGTTTCAAACAGAGATGGCAACAAAGAGGCAAAACTTACAGCCTGCAGCTGTATTAATAGGTATTAATATGAACTTTTTAGGGGTACATAAAATAAAAAGTTGTCCCTTCAAGTGTACTGCCCCAGTGACAAGCTGTTGAACCCATTAATGTGCATTTTTTGTGTTGATGTTGATGTTAAAATGGTCATATCATAAGTAATCAATCTTTTCTTAATCTTTTGAGATAAAAGAGTTCATGACACTATGAAAAATAACTTTAAGGACTCTAAACTTCACCTCCTGTCCGCATTTCAGCGACAACCACACCTGGTCGGTACTCAGAGATCTGGCCTGCCCAGTCACTCTGAGGTAACACCAAGGTTAACATGGCCCAGCAAAAGCCAAAAAAACGGTGAATGTCTATTACAGCAGCAAAACTCCATTCAGTGACAATGACAATGCTAAAATGTCTCAGCTTTGGGGTTTGTCTGTAGCAAGTGTGTTTAATAATGTTTTTTCAAAACACAAGCATTATAATCATGACAGATACACGCAATCTTGAAAGAGGCAACCTTTGTTTCCGATTGCCCTAAGTAAAGATATTGTCAATTTCGATTGTCAATTTTCTAAACTTTTGTAAACCCAGCCAGCATAATCACAATGAAAGCATCCAAACCACATATTTAACCTAAATAGAAGGAGTCCAATGTGTAAACAAAATGATTTCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263930 True 1451 lncRNA 0.37 2 6134517 6136029

Neighbor

gene id symbol gene type direction distance location
CI01000054_05989042_05989389 NA coding upstream 144722 5989042 ~ 5989795 (+)
CI01000054_05957906_05981499 ELP2 coding upstream 152295 5957399 ~ 5982222 (+)
CI01000054_05926683_05953807 CTNNAL1 coding upstream 180562 5926683 ~ 5953955 (+)
CI01000054_05875546_05877938 SLA1 coding upstream 256195 5875479 ~ 5878322 (+)
CI01000054_05841632_05851621 NDRG1A coding upstream 281990 5841496 ~ 5852527 (+)
CI01000054_06292147_06297237 NA coding downstream 155947 6291976 ~ 6297560 (+)
CI01000054_06305908_06312122 NA coding downstream 169879 6305908 ~ 6312163 (+)
CI01000054_06411594_06411984 NA coding downstream 275565 6411594 ~ 6412521 (+)
CI01000054_06434217_06435680 OTUD6B coding downstream 297727 6433756 ~ 6435680 (+)
CI01000054_06437628_06441214 NA coding downstream 301599 6437628 ~ 6441481 (+)
G232545 NA non-coding upstream 239550 5894748 ~ 5894967 (+)
G232539 NA non-coding upstream 244512 5889794 ~ 5890005 (+)
G232532 NA non-coding upstream 261662 5872373 ~ 5872855 (+)
G232530 NA non-coding upstream 264094 5870198 ~ 5870423 (+)
G232526 NA non-coding upstream 267428 5866867 ~ 5867089 (+)
G232648 NA non-coding downstream 150236 6286265 ~ 6287079 (+)
G232664 NA non-coding downstream 279634 6415663 ~ 6416211 (+)
G232674 NA non-coding downstream 293102 6429131 ~ 6429432 (+)
G232684 NA non-coding downstream 315829 6451858 ~ 6452068 (+)
G232689 NA non-coding downstream 323852 6459881 ~ 6460125 (+)
G232558 NA other upstream 92654 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 509842 5608457 ~ 5634804 (+)
G231863 NA other upstream 1683787 4407152 ~ 4450730 (+)
CI01000054_03848427_03914231 NA other upstream 2220971 3848427 ~ 3914231 (+)
G230689 NA other upstream 3047125 3078502 ~ 3087392 (+)
G232659 NA other downstream 238821 6374850 ~ 6375894 (+)
G232870 NA other downstream 751883 6887912 ~ 6888503 (+)
G233024 NA other downstream 1431494 7567523 ~ 7609893 (+)
G233306 NA other downstream 2168570 8304599 ~ 8304949 (+)

Expression


Co-expression Network