G232739



Basic Information


Item Value
gene id G232739
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6592934 ~ 6593225 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU264102
GCCGAACTTAAAGGAAGATGTCATGTAAATTTCTTTGTCTGACTGTCTAGTGATATTTATCTTTATATAAATATTTTTGAGAAGCTAGACATGTTGGTTAAGAATATAATTTCTGCCGTATATGCTAAAAATCCTCATATGAAAATAGACACATGACACATGCACATGTAGCATCAACTCCACTTCATTAGGTTTCACACACACAAACACACATACACACATACACAAACTACTTCTGTCATCTTGTCTGGTATCTGTCAGTCACACGTTAGACAACGGTGGCGCCCTTAAG

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU264102 True 292 lncRNA 0.36 1 6592934 6593225

Neighbor


gene id symbol gene type direction distance location
CI01000054_06437628_06441214 NA coding upstream 151453 6437628 ~ 6441481 (+)
CI01000054_06434217_06435680 OTUD6B coding upstream 157254 6433756 ~ 6435680 (+)
CI01000054_06411594_06411984 NA coding upstream 180413 6411594 ~ 6412521 (+)
CI01000054_06305908_06312122 NA coding upstream 280771 6305908 ~ 6312163 (+)
CI01000054_06292147_06297237 NA coding upstream 295374 6291976 ~ 6297560 (+)
CI01000054_06756071_06757443 NA coding downstream 162584 6755809 ~ 6757514 (+)
CI01000054_06759472_06761310 NA coding downstream 165586 6758811 ~ 6761310 (+)
CI01000054_06789505_06789810 NA coding downstream 195137 6788362 ~ 6789946 (+)
CI01000054_06795526_06796596 TRIB1 coding downstream 202301 6795526 ~ 6796644 (+)
CI01000054_06865381_06869404 KLHL38A, KLHL38 coding downstream 272156 6865381 ~ 6869942 (+)
G232736 NA non-coding upstream 6222 6586285 ~ 6586712 (+)
G232735 NA non-coding upstream 9013 6583631 ~ 6583921 (+)
G232728 NA non-coding upstream 37295 6555408 ~ 6555639 (+)
G232721 NA non-coding upstream 54727 6537979 ~ 6538207 (+)
G232719 NA non-coding upstream 59704 6533021 ~ 6533230 (+)
G232740 NA non-coding downstream 58 6593283 ~ 6593490 (+)
G232752 NA non-coding downstream 22461 6615686 ~ 6615908 (+)
G232755 NA non-coding downstream 25353 6618578 ~ 6618811 (+)
G232756 NA non-coding downstream 28162 6621387 ~ 6621623 (+)
G232758 NA non-coding downstream 29690 6622915 ~ 6623217 (+)
G232659 NA other upstream 217040 6374850 ~ 6375894 (+)
G232558 NA other upstream 551071 5993660 ~ 6041863 (+)
CI01000054_05608892_05634793 RNF19B other upstream 968259 5608457 ~ 5634804 (+)
G231863 NA other upstream 2142204 4407152 ~ 4450730 (+)
G232870 NA other downstream 294687 6887912 ~ 6888503 (+)
G233024 NA other downstream 974298 7567523 ~ 7609893 (+)
G233306 NA other downstream 1711374 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 1712712 8325126 ~ 8329716 (+)
G235560 NA other downstream 3794911 10388136 ~ 10392378 (+)

Expression



Co-expression Network