XLOC_009923 (CU062628.1)


Basic Information

Item Value
gene id XLOC_009923
gene name CU062628.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25133335 ~ 25135212 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019793
TGAATATTTCACTAAGACAAAGCAAACGTTTTTAAACTAGTGCCAAGTCTTCCAAGTGTAAATTTGTCCTTTACAAATAAGAGCAGTGAAAGAaccttcatttttatttatttgaataggAAAAAAAATCTGGTAAATTAATGAAGAAGATGACATCTGTATCACCTAACACTAGTGACAAAGTGtcatcagataaaaaaaacaaaaacgtgtAGCTAAGATGAGCAAGTAAACTGACCAGCTCAGGAAATGGAGGAGTACTGGGCGGGCTTTGGATGTGGGAGTCTGATCTTCATAATTTTTATATAAGCCATGCGACTGTCGACATTGGATATATGCTCATTGACTTTTGCACAAAGCCATTGAAGATTCAGCGGACTGAACAAAGTATTAATTTACATTCATCTTTTTCACTGCAATGAAGACTGTGGTGTTTGCTTTGCTTGTTGTGAATGTGGcTTGTAGCCCGGTTGACAAAATCATTGGAGGTTATGAATGTCCTCCAAACTCACAGCCCTGGCAGATCTACATTACTAATGATGGGCAACGCTGGTGTGGAGCATCTCTGATTAACGAGAGCTGGGCCGTTTCTGCTGCTCACTGCAACATTGGAGCTAATCTTCTTACTGTCTACCTGGGAAAGCACAACATAGATGTTGTAGAAAAAACAGAGCAGCGGATCAGGACCGAGAAAGTGTTTCCTCACCCAGAATTTAAATTTCCTTCAGAGGACAATGACATCATGCTGATCAAGCTGAAAGACCCTGCAGTGTTCAACCAGTATGTTCAGCCGATTCCTCTGGCGACCAGCTGTTCTTCTGAAGGAGAGCAGTGCTTGGTTTCTGGATGGGGCTACACTGAAGTTGGTTTACCTTCTGTGCTGCAGTGTTTGGATTTGGCTGTACAGTCGAGACAGGAGTGTGAGCGTGTGTATAAAGATAAGTTTACTCAGAACATGCTCTGTGCTGGATTCATGGAGGGAGGAAAAGGCGTTTGTCATGGTGACTCTGGTGGTCCGCTTGTGTGCAATGGTGAACTACGAGGAGTTGTTTCGTGGGGTGCAGGCTGTGCTGAACCAGGATATCCTGCAGTTTATGTTGAGGTCTGCCGTTACAGTGACTGGATCGCAACCACCATCGCAAATAACTAACTGTTTGTTCAGCTCATTTGGGCCTTCTGAAAGTATCTTTGATTAAACAGCTTTCTCAGCctgcaacaaaacaaaagtatttcTGTTCTTATTTTATATGGACAACAGTtgctataatataaaatatgtttcttGGGGCTACTACTGTGGTTTAAAAGAAAAACCTGAATATTTTGAGATATCTCGCTGCTTCTGCACAGACTAGGCTAATAGCATTGTAGCTAACTAACTATTTGTTTTTGCCTGGGTTTAATGTaatcctaaaatattttaaattaaattcagcttgAAACTtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090267

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019793 True 1446 mRNA 0.41 5 25133335 25135212

Neighbor

gene id symbol gene type direction distance location
XLOC_009922 zgc:92590 coding upstream 3260 25126935 ~ 25130075 (+)
XLOC_009921 si:ch211-261d7.6 coding upstream 8384 25116827 ~ 25124951 (+)
XLOC_009920 zgc:66448 coding upstream 17863 25107344 ~ 25115472 (+)
XLOC_009919 si:ch211-261d7.3 coding upstream 28342 25095483 ~ 25104993 (+)
XLOC_009918 si:dkeyp-84f3.9 coding upstream 52859 25074029 ~ 25080476 (+)
XLOC_009924 znf576.1 coding downstream 2271 25137483 ~ 25163213 (+)
XLOC_009925 znf576.2 coding downstream 28231 25163443 ~ 25169845 (+)
XLOC_009926 wu:fe05a04 coding downstream 36620 25171832 ~ 25181542 (+)
XLOC_009927 hcst coding downstream 48995 25184207 ~ 25187809 (+)
XLOC_009928 tyrobp coding downstream 61360 25196572 ~ 25200757 (+)
XLOC_009913 BX539313.2 non-coding upstream 214378 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 235082 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 236224 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 252117 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 559534 24565734 ~ 24573801 (+)
XLOC_009929 NA non-coding downstream 72406 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 84223 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 98741 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 206204 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 206512 25341724 ~ 25341811 (+)

Expression


Co-expression Network