Gene
RNA
| Item | Value |
|---|---|
| gene id | G233685 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 6619674 ~ 6619899 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU265159 | True | 226 | lncRNA | 0.39 | 1 | 6619674 | 6619899 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_06503408_06508723 | NA | coding | downstream | 109606 | 6503233 ~ 6510068 (-) |
| CI01000054_06469564_06492881 | RUNX1T1 | coding | downstream | 126793 | 6468852 ~ 6492881 (-) |
| CI01000054_06422150_06433402 | PEX1 | coding | downstream | 185985 | 6421808 ~ 6433689 (-) |
| CI01000054_06321499_06337371 | NA | coding | downstream | 281907 | 6321269 ~ 6337767 (-) |
| CI01000054_06283619_06286512 | NA | coding | downstream | 332998 | 6280544 ~ 6286767 (-) |
| CI01000054_06629482_06641861 | TRIQK | coding | upstream | 9406 | 6628082 ~ 6642160 (-) |
| CI01000054_06830485_06831336 | FAM84B | coding | upstream | 209093 | 6828992 ~ 6831336 (-) |
| CI01000054_06835747_06861855 | FAM91A1 | coding | upstream | 214521 | 6834420 ~ 6863079 (-) |
| CI01000054_06874039_06875193 | NA | coding | upstream | 253421 | 6873320 ~ 6875309 (-) |
| CI01000054_06895032_06942103 | SPIRE1A | coding | upstream | 274929 | 6894828 ~ 6942362 (-) |
| G233678 | NA | non-coding | downstream | 10810 | 6608508 ~ 6608864 (-) |
| G233677 | NA | non-coding | downstream | 11591 | 6607832 ~ 6608083 (-) |
| G233577 | NA | non-coding | downstream | 95694 | 6513490 ~ 6523980 (-) |
| G233608 | NA | non-coding | downstream | 161278 | 6458178 ~ 6458396 (-) |
| G233601 | NA | non-coding | downstream | 168774 | 6450682 ~ 6450900 (-) |
| G233689 | NA | non-coding | upstream | 4922 | 6624821 ~ 6625104 (-) |
| G233687 | NA | non-coding | upstream | 5889 | 6625788 ~ 6625906 (-) |
| G233694 | NA | non-coding | upstream | 40641 | 6660540 ~ 6660745 (-) |
| G233704 | NA | non-coding | upstream | 51453 | 6671352 ~ 6671552 (-) |
| G233709 | NA | non-coding | upstream | 61580 | 6681479 ~ 6681940 (-) |
| G232274 | NA | other | downstream | 1410434 | 5206199 ~ 5209240 (-) |
| CI01000054_04671351_04681181 | PEF1 | other | downstream | 1947441 | 4670151 ~ 4681361 (-) |
| G231645 | NA | other | downstream | 2636851 | 3981847 ~ 3982823 (-) |
| G230908 | NA | other | downstream | 3556331 | 3057648 ~ 3063343 (-) |
| CI01000054_02857402_02860451 | NA | other | downstream | 3759101 | 2857402 ~ 2860573 (-) |
| CI01000054_07165957_07169539 | HEYL | other | upstream | 545536 | 7165435 ~ 7169539 (-) |
| G235216 | NA | other | upstream | 2628140 | 9248039 ~ 9248538 (-) |
| CI01000054_09483912_09484282 | MRPL36 | other | upstream | 2863248 | 9483147 ~ 9484282 (-) |
| CI01000054_09864693_09866871 | PPP1R11 | other | upstream | 3243422 | 9863321 ~ 9867212 (-) |
