Gene
RNA
| Item | Value |
|---|---|
| gene id | G233712 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 6683852 ~ 6684871 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU265186 | True | 1020 | lncRNA | 0.43 | 1 | 6683852 | 6684871 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_06629482_06641861 | TRIQK | coding | downstream | 41692 | 6628082 ~ 6642160 (-) |
| CI01000054_06503408_06508723 | NA | coding | downstream | 173784 | 6503233 ~ 6510068 (-) |
| CI01000054_06469564_06492881 | RUNX1T1 | coding | downstream | 190971 | 6468852 ~ 6492881 (-) |
| CI01000054_06422150_06433402 | PEX1 | coding | downstream | 250163 | 6421808 ~ 6433689 (-) |
| CI01000054_06321499_06337371 | NA | coding | downstream | 346085 | 6321269 ~ 6337767 (-) |
| CI01000054_06830485_06831336 | FAM84B | coding | upstream | 144121 | 6828992 ~ 6831336 (-) |
| CI01000054_06835747_06861855 | FAM91A1 | coding | upstream | 149549 | 6834420 ~ 6863079 (-) |
| CI01000054_06874039_06875193 | NA | coding | upstream | 188449 | 6873320 ~ 6875309 (-) |
| CI01000054_06895032_06942103 | SPIRE1A | coding | upstream | 209957 | 6894828 ~ 6942362 (-) |
| CI01000054_06946694_06947533 | NA | coding | upstream | 260511 | 6944557 ~ 6947680 (-) |
| G233709 | NA | non-coding | downstream | 1912 | 6681479 ~ 6681940 (-) |
| G233704 | NA | non-coding | downstream | 12300 | 6671352 ~ 6671552 (-) |
| G233694 | NA | non-coding | downstream | 23107 | 6660540 ~ 6660745 (-) |
| G233687 | NA | non-coding | downstream | 57946 | 6625788 ~ 6625906 (-) |
| G233689 | NA | non-coding | downstream | 58748 | 6624821 ~ 6625104 (-) |
| G233747 | NA | non-coding | upstream | 50257 | 6735128 ~ 6735376 (-) |
| G233770 | NA | non-coding | upstream | 93241 | 6778112 ~ 6778311 (-) |
| G233791 | NA | non-coding | upstream | 180514 | 6865385 ~ 6865511 (-) |
| G233799 | NA | non-coding | upstream | 199437 | 6884308 ~ 6884514 (-) |
| G233803 | NA | non-coding | upstream | 203837 | 6888708 ~ 6889021 (-) |
| G232274 | NA | other | downstream | 1474612 | 5206199 ~ 5209240 (-) |
| CI01000054_04671351_04681181 | PEF1 | other | downstream | 2011619 | 4670151 ~ 4681361 (-) |
| G231645 | NA | other | downstream | 2701029 | 3981847 ~ 3982823 (-) |
| G230908 | NA | other | downstream | 3620509 | 3057648 ~ 3063343 (-) |
| CI01000054_07165957_07169539 | HEYL | other | upstream | 480564 | 7165435 ~ 7169539 (-) |
| G235216 | NA | other | upstream | 2563168 | 9248039 ~ 9248538 (-) |
| CI01000054_09483912_09484282 | MRPL36 | other | upstream | 2798276 | 9483147 ~ 9484282 (-) |
| CI01000054_09864693_09866871 | PPP1R11 | other | upstream | 3178450 | 9863321 ~ 9867212 (-) |
| CI01000054_10817235_10819181 | TAC1 | other | upstream | 4119000 | 10816015 ~ 10819362 (-) |
