XLOC_009925 (znf576.2)



Basic Information


Item Value
gene id XLOC_009925
gene name znf576.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25163443 ~ 25169845 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00019795
gatgcaggttttttttttcagtctaccAGCGGGTCACTGATTACACGTTTGCGCCCCCTTTATTTTCATATGTCAGGCTTATGCCTTTTCCCTCCAGACAAGAAAAGGTTATTCACTTCCAGTAACATTTACAGCAAGTGTACACTGAATTCTTAAAGCCTGAAAATGGACTCTGACCTACTGAAGATAGAGGAGATGGTGATGGGAGGTGGAGAGGCTGCTGCTGCCCCTGCTGAACTGCCCCCTGAGAAGCCTGAGGACTCATATGTCACCTCCATTAGGGACCGCTTGCCACCTCCTGTTATTCAGTCATACCAGCATGAAAGCCTACAGTGTTTCCAGTGTTTCATAACTTTCTGTAACTCAAAAGCCAAGGAAAGGCACATGAAGAAGAGTCATCGGGAAGAGTACAAACAGCAACTTCAGCAGTGCGATACTCTCTTCACATGTTATGTGTGTGATCGAACCTTCCCCTCGTCTGAGGAACTGACACAACATCAGTCGACCCACAACAAGGAGGACAAGCCCTTTAAATGTGTTCACTGCCAAGAATGTTTTCGTACATTCTCAGAGTTAACAACGCATCGACGACAGGTGTGTCCGGAGCGTCAGTTTGTGTGTAAAGAATGCAACGAGACATTTCGAAGCCCCGGACTTTTGCGTAGCCATCGTTTGATGCAGCACCCCGTGCCCCAGGATGAAGAGGATGTGGAGGATCCCTCCAAGACCTACCGCTGTGGTAAATGCGGACGAGGATTTGAGGAAGAGGCAGAGCTCCTTCAGCATCAGGAGAACCACGCAGGAGACCGGCATTGCAACGGTGGCGCTGCTGTCAAACGCAGAGGGAGGCCCCCCAAATATGAGGCCGCAGCTCCCAGTGAAAAGAAggtaaagaaaaagaagaaggatGAAGACGCAGAGGAAACCAATCATTCAGAGGATGCTTCTGCAACATCGGCAAAAACAGGGGGAAGAAGAGGACGCCCTGCCAAATCCACCCAGGAACCCGAGGCGGAAGATGAGAAGGCAGAAAATGATGACAAGAAATCTGTCCCCGAGCCAGAACGGCAGATCCCTTGCACTGAATGTGATCTCACTTTCCCCACCCTGACGCTGCTGCGAATGCACAAGAAAGAGAAGCACACGCAGAAGAAGCCTCACCCCTGTAAAGAGTGTGAGGAGAGTTTTAACCGACCTGCGCAACTGCAGGCCCACATGGCCAGAGCACACAGCGTCGGACGGCACACCTGCCCCACATGCGGGAAAAGCTTTGGCAGAGAGAGCAACCTGAAGGCTCATCAGCAGAGCCACGAGAAAGAGGAGAAGCTGGCTGGAAAAAGATAATTCAGTTagagggagattttttttttgcaggtgtACGTTAACAaaacacatttgatttttttaatatgttgtgtATAGAAATATAGGTTGGGGGAGGGTTTGCGTTAGGGCTGAGGTTGTAACATAGCAGGCAATCCCTCAATTGAGTGACGTTTGAGAGCAACACTATGTGGACGTTTGAAAACTGGAAACCCAAAGGGTTGTGAGTTCAAGATTAACTATTAGTAACCATGTTTGGTGCTTCACTGTATCTTGACATCTGTACATAGCTTTGGCATGGCAAGAAAAAAAGGATTCATACCACAGCTGAAGTCTCATTTGTTGGGTAATCATGTTGTAACTAATACCATCAAGAGAACCCCACAGAAAAAGCCTTGTTATATTGTCTAAAGGCTTTacattgttgttttctttttcctttttttgttgaaaattttAAAGTCTTTTCTATGAATGTGTTCTTGTTTTTACGTAATTTTTAGAAGTGTACAATGATGAGTGGAAAGATTTACAAAATGATTGTTTTCTGATGAGGTTTGACTTGATATGATTTCAAATGTTTCCATTTTCTACAGGTATGACATGACATTTGACTTGAATTTAATGTTACCAACAAATAAGGCAGTTCTTTGCGTGAAGTAAATGTCTAAATAATTCACTGAAAGTG

Function


symbol description
znf576.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to human ZNF576 (zinc finger protein 576).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1738 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Orthologous to human ZNF576 (zinc finger protein 576).

Ensembl:

ensembl_id ENSDARG00000078164

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00019795 True 2011 mRNA 0.45 5 25163443 25169845
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_009924 znf576.1 coding upstream 230 25137483 ~ 25163213 (+)
XLOC_009923 CU062628.1 coding upstream 28231 25133335 ~ 25135212 (+)
XLOC_009922 zgc:92590 coding upstream 33368 25126935 ~ 25130075 (+)
XLOC_009921 si:ch211-261d7.6 coding upstream 38492 25116827 ~ 25124951 (+)
XLOC_009920 zgc:66448 coding upstream 47971 25107344 ~ 25115472 (+)
XLOC_009926 wu:fe05a04 coding downstream 1987 25171832 ~ 25181542 (+)
XLOC_009927 hcst coding downstream 14362 25184207 ~ 25187809 (+)
XLOC_009928 tyrobp coding downstream 26727 25196572 ~ 25200757 (+)
XLOC_009929 NA coding downstream 37773 25207618 ~ 25213978 (+)
XLOC_009930 NA coding downstream 49590 25219435 ~ 25242310 (+)
XLOC_009913 BX539313.2 non-coding upstream 244486 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 265190 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 266332 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 282225 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 589642 24565734 ~ 24573801 (+)
XLOC_009931 NA non-coding downstream 64108 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 171571 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 171879 25341724 ~ 25341811 (+)

Expression


Expression of XLOC_009925(znf576.2) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Expression of XLOC_009925(znf576.2) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05735304_05738483 ZNF576.2 coding CI01000027 null 5735127 ~ 5738924 (+)