G233747


Basic Information

Item Value
gene id G233747
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 6735128 ~ 6735376 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU265221
CTCCGGCTGAGGGCAGCCGGCAGCGAATCCGCCGTTCCCTGCTCCTCCCCTTCATGGCGGACGGGAGCAGGCTCCGGCCCACGGCAAACGACGGCATTCCTCCGCTCCCTCCAGGACGGCAGCCACCCCACCTCGTCCCAGGAGCACGGCATCCGGGTCTCCGTCCCACCTTTCACAAGGCTCCAGTACCACCGCCTCGGGCAGCCTCTCGCGGTCTTCACTCCCGCGCTGCCCGAACTCCGCAGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU265221 True 249 lncRNA 0.70 1 6735128 6735376

Neighbor

gene id symbol gene type direction distance location
CI01000054_06629482_06641861 TRIQK coding downstream 92968 6628082 ~ 6642160 (-)
CI01000054_06503408_06508723 NA coding downstream 225060 6503233 ~ 6510068 (-)
CI01000054_06469564_06492881 RUNX1T1 coding downstream 242247 6468852 ~ 6492881 (-)
CI01000054_06422150_06433402 PEX1 coding downstream 301439 6421808 ~ 6433689 (-)
CI01000054_06321499_06337371 NA coding downstream 397361 6321269 ~ 6337767 (-)
CI01000054_06830485_06831336 FAM84B coding upstream 93616 6828992 ~ 6831336 (-)
CI01000054_06835747_06861855 FAM91A1 coding upstream 99044 6834420 ~ 6863079 (-)
CI01000054_06874039_06875193 NA coding upstream 137944 6873320 ~ 6875309 (-)
CI01000054_06895032_06942103 SPIRE1A coding upstream 159452 6894828 ~ 6942362 (-)
CI01000054_06946694_06947533 NA coding upstream 210006 6944557 ~ 6947680 (-)
G233712 NA non-coding downstream 50257 6683852 ~ 6684871 (-)
G233709 NA non-coding downstream 53188 6681479 ~ 6681940 (-)
G233704 NA non-coding downstream 63576 6671352 ~ 6671552 (-)
G233694 NA non-coding downstream 74383 6660540 ~ 6660745 (-)
G233687 NA non-coding downstream 109222 6625788 ~ 6625906 (-)
G233770 NA non-coding upstream 42736 6778112 ~ 6778311 (-)
G233791 NA non-coding upstream 130009 6865385 ~ 6865511 (-)
G233799 NA non-coding upstream 148932 6884308 ~ 6884514 (-)
G233803 NA non-coding upstream 153332 6888708 ~ 6889021 (-)
G232274 NA other downstream 1525888 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2062895 4670151 ~ 4681361 (-)
G231645 NA other downstream 2752305 3981847 ~ 3982823 (-)
G230908 NA other downstream 3671785 3057648 ~ 3063343 (-)
CI01000054_07165957_07169539 HEYL other upstream 430059 7165435 ~ 7169539 (-)
G235216 NA other upstream 2512663 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2747771 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 3127945 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 4068495 10816015 ~ 10819362 (-)

Expression


Co-expression Network