XLOC_009926 (wu:fe05a04)


Basic Information

Item Value
gene id XLOC_009926
gene name wu:fe05a04
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25171832 ~ 25181542 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019796
AGCTCACCTTCTGCATGCAACCTGATTTGTGCTTTATTACTTTGTGTcgttataaaatagtttttgcCGTTGACGGTAATTTCAGTTACGCTTTGAGCAGTTGGTGATATTTTCAAAGCCGATCATGGCAGTTAAGGAATGACTATAAGTTAGCAGGCAGTATCAAAGGTCCATTGTTGCATTGCTGAACAGCAGTGTTTGCAAATGCTCGTCGAAGACAACTAGGGCACCATGTCAGAGTTTACCCTCGATATCCAGCTGACAGAGTTGGGTTTTTCAAACTGGAATTTTCCCCTCTGTGAGCCACCAAGTGTTAAGGAGACATTTTTGCCAGCTCAGAGCACCACAGAAAAACCAACAACTGCAGACTGTCATGAAGATCCCTGCTTCGTTCCAAATGCCTTGACAGAAAAAAGCTTTCTACAGGACCATCAATATTTCTGTCCCTTCAAACCAAACTCTCCCATCAGCGTAGAAACAGCTCAGAGTGATTCAAATATCGTTAGCACCGAAAAGAAGAACAAAGCTATTTGCAACTCATGGAATAAAGCAAGAAAAAGAGAGCGTGCAGGTCGAAGAAACAGTGATGACTCTCAAGATGGAGAAGAGGAAATGGAAAAAGATGAAGAGGAGCAGACATGTGCAGAGGGGACGCTAGAAACCTCCAGTCCTACCATGGAGGAAGTTGTGTCTGGTGAGGAAGGGACagatgaaaatgaagtggaataTGTTTTGACTGATGATGATGGGGATTATGTTGATGAAGATGAAGAGGTGGAAGATGAtattgaggaggaggaggaggagaaggaggaacAAGATGAGGATGTTTCCTGGTCAGAGTCGAACGAAAATGGAGAAAACAAAGACAATCTCTGCCATGTGTGTGATCTCACCTTCTCCTCTCTCTTCTTGCTCCGAGAACATTTGAACATGCATACGGGTGTTCGGCCCTACCGCTGCGACGAATGCAGCAAGCAGTTCTGCCAGTTAGTCAATTACCGCACACACCTTCGCTCCCACTCGCAAAAGGCCTCCATCCACTGCCGCGTTTGCTCAAATACCTTCGAGACCGAGGAGCAGCTTCAACACCACTTGGACACTAACCACTTTGAGAAAGAGTTCTACCAGTGTGATTTTTGCAAGCAGATTTTCACTGACCTTGAATTGTGCAAGGATCATGTAGAGGCGCATAGGCAACAGGCCAAGCGGCATTTGTGTCTCAAATGTGGCTCCAGTTTTCGCCATCGCAACTCTCTCCTACTTCACCTTGAGTGGCACAGCAGAGGCTTTTTCTCCTGCCCGGACTGTGAGCGAACGTTCTCCAGCAAGACTTCTTTATTACGCCACAGTTTCTCTCATTTGGGCGTCTTGCCGTACACGTGCCTGAAGTGCAAACGTCATTTCCGTTTGCCCTCGCTCTACCACAGCCATGAGTGTAAGCCCGAGAGCATCCAGTGTATGGCGTGTTTGGTTTTCTTTCAGAGTCAGGAGGATTTTGACAAGCATAAGAAGGAAACTGGATGCTGGGGTCATCAAGGGTCTTTGCAGACCAAGACTGATGAAATCCGTTGCATGGAGTGTGGAAAAGTGTTTGCGAGCGTCGAGGAGCTGAAGAAGCACGGGAGCACACACCAGCGGGTCCTGAAATGTGCCGAATGCGGGATGGGTTTCCGTTCTGCGCTCATGCTTATGTCACATATGGGAGGTCATGCGGCACAGCGGCCGTGCCTCTGCCAGGACTGTGGCCTGGGCTTTCCCCATCAGCAGGGTTTTGACAGCCACCTGAAAACTTGTGGATTGGAGGCACCACCGGTGGTTACTGTGAAGAAGCCAAAACTGAAAGCAAGCCCCACAACAAAACCAGTTGCTCAAAGCATAATCTTTCAAACTATCGCTCAGCCCTCAAATCCTGCAATGTTCTCTAGTGGCTTGAAGAATGTGCAGATACTTCCAGTAGGTGATCAGAACAGGACTGCTGATGGCAAATGGAGTCTGACCTTAAATGAAAAGCCTTCTCCAGGAACGCCTTTAGTGATGCTTCTGCCGGTCCCCACCTCAGATTCTACCAAGAGCTCACAAACATTCCTACCTTCATCATTAATCTTAGAAACCCCTTCAACCACTTCAAATATCATTCCCCTTCCGATGGCCCCATTCAGCAGCGTCATTACTAAAGAAGAGCCCAacattccttcaaacacactcattccTGTGGAAAGCCTCGACAGTACCTCAAAGAAGAGATGGACCATTGTTGAAGGTCAAGGTTCTGTTCATGGTTTTGATATGGAAAACTCAAAGGCAGGTGAACAGACTACAGTTGTGATTCAGGATGAAAGAATGATTGTTGCTACACAAGTAATGGAGAATGAGCAAAAAATTCAATCAAACATGAAATCTAATGTATCAAGGGATGAAAAAACAAATCCAGGAGGTTTGTCAGATGCTGCTGAACCTGCAAACGCAGTGACCCCATTGTGTCAAGGGCAAACACTGGATTCTTTACAAACAGACTCTCTCGTTTCTGCTTCGTCAGAAATGACTCCTCACAAAAGTAAAGACGAGCAGTGTTTAGAAGAAGACAAGTCATCTAACAGGACATGCACAGAGACAGAATTTACCTTGATGGAGGACAAGGCAGAAGATGGTCCACAGGGTCAAAACGAGTCTGGCTTTGACGTGGAGGTGGAGATTCGGGAAGATGTGGATTCCAGTAATACGGAAGTGGAGATCGGCGATGAAGACAGCGGAGTGGACATGTTGGACGGTGAGCTTCATGAATGTGTGACTTGTGGACAAGTTCTTCCAGAGAAGGACATGGTCCAGCACTACATGAAGCATGCTGCGGTCAATGACGGTCCTGAGCCCTCGCCTGTTAACAGTAGCACACACACTACACAACGCAGCCCTCCACACAGCCCGCTTAGAAAAAGACTGCGGTCTGGCACAGTGCTGTGACGTTAGTTCACAAATGTttagatgattttttttattattatattaaattgattTGACTTGATAAATATTACACCATCTTTAcatgatttattttctttgggAAACGGGTGTCACAATTATTTTTCCCGGATGGTGAAAAGTTTGGTGAATGTTAAAACCAAGTCTCTTTTGAATGTATTCTGGTTtgctttcacagtatttcattgCATTTCCACTATGATGTGCAGGATACAATAAATCTAGATTAGGAAGTGG

Function

symbol description
wu:fe05a04 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF214 (zinc finger protein 214) and ZNF784 (zinc finger protein 784).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4873 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF214 (zinc finger protein 214) and ZNF784 (zinc finger protein 784).

Ensembl:

ensembl_id ENSDARG00000087530

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019796 True 3216 mRNA 0.46 4 25171832 25181542

Neighbor

gene id symbol gene type direction distance location
XLOC_009925 znf576.2 coding upstream 1987 25163443 ~ 25169845 (+)
XLOC_009924 znf576.1 coding upstream 8619 25137483 ~ 25163213 (+)
XLOC_009923 CU062628.1 coding upstream 36620 25133335 ~ 25135212 (+)
XLOC_009922 zgc:92590 coding upstream 41757 25126935 ~ 25130075 (+)
XLOC_009921 si:ch211-261d7.6 coding upstream 46881 25116827 ~ 25124951 (+)
XLOC_009927 hcst coding downstream 2665 25184207 ~ 25187809 (+)
XLOC_009928 tyrobp coding downstream 15030 25196572 ~ 25200757 (+)
XLOC_009929 NA coding downstream 26076 25207618 ~ 25213978 (+)
XLOC_009930 NA coding downstream 37893 25219435 ~ 25242310 (+)
XLOC_009931 NA coding downstream 52411 25233953 ~ 25235093 (+)
XLOC_009913 BX539313.2 non-coding upstream 252875 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 273579 24898171 ~ 24898253 (+)
XLOC_009910 NA non-coding upstream 274721 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 non-coding upstream 290614 24881122 ~ 24881218 (+)
XLOC_009905 NA non-coding upstream 598031 24565734 ~ 24573801 (+)
XLOC_009937 dre-mir-30d non-coding downstream 159874 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 160182 25341724 ~ 25341811 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05740951_05748956 NA coding CI01000027 null 5740951 ~ 5748956 (+)