G233822


Basic Information

Item Value
gene id G233822
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7040111 ~ 7049000 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU265302
TATACCTTAATAATGCATGAAATTTTTTAGGAAACAGTCATCAAAAATCATTGTGTATATTTACCTTAACAAACGGGAATGCTGGACCAGGAGCAAAGGGTTCATTCTCGTGCTCCACCTGATACCTGAGGTACTCCTCTATTCCTTGCTGCTCAAACACCTTCTGCTCTTTCTCTGTGCGGAACAGAACCCGCGATGACACTGCAATGGTGACTGCGTTCTCTGGTTTGGGAAAGAATATGCCTCCCTCCACCTTCCTGGCCCGTCTCACAGGTCCTGATTTGGGCTTCTTTGTAGTACCCATATTTTCATGGATATCCTTGCTGTCCTCCCAGGATGCTTTGCTATCACCGTTTGAGGCTGGCGGACAGGTGTTGGGCATGGGGTCTTGCCCCTTCATGACCTGAACAGGGTCAAGACTCATTCTCCCCAACGCTTCTCATTAACGACACACTGATCCAGGGCTGTATCACGCTGTGCTGTTCTCTCTGTTCACATGCACGGCCTCTATTCCACACACAGTGTATGTTCCCAGCTCTAGGCAGGTGGTATCCAATGGTGTATCTCCTGCTTCAGTGTCTAATGACAGTGCTGGCTTTGGTTCTGTGTGGCTATATCCTCTCTGCTCTGACGCTCTGCTTGCAATCTGCTGCTGTGACGCGGTATGTGTTGATATCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU265302 True 680 lncRNA 0.49 3 7040111 7049000

Neighbor

gene id symbol gene type direction distance location
CI01000054_07033076_07038297 STK3 coding downstream 1814 7031700 ~ 7038297 (-)
CI01000054_07026336_07030820 UK114, RIDA coding downstream 8602 7026147 ~ 7031509 (-)
CI01000054_07006908_07009054 RPL30-PS10, RPL30.S, GM7429, RPL30.L, RPL30 coding downstream 31057 7006875 ~ 7009054 (-)
CI01000054_06956328_06957402 NA coding downstream 81623 6956321 ~ 6958488 (-)
CI01000054_06951426_06955263 ATP6V1C1, ATP6V1C1B, ATP6V1C1A coding downstream 84848 6951426 ~ 6955263 (-)
CI01000054_07080724_07095503 NA coding upstream 31352 7080352 ~ 7095673 (-)
CI01000054_07130499_07136946 NA coding upstream 81315 7130315 ~ 7136946 (-)
CI01000054_07165957_07169539 HEYL coding upstream 116756 7165435 ~ 7169539 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding upstream 178594 7227594 ~ 7231489 (-)
CI01000054_07311700_07314853 NA coding upstream 262540 7311540 ~ 7317174 (-)
G233812 NA non-coding downstream 28134 7011064 ~ 7011977 (-)
G233627 NA non-coding downstream 76703 6960373 ~ 6963408 (-)
CI01000054_06946694_06947533 NA non-coding downstream 94226 6944557 ~ 6947680 (-)
G233803 NA non-coding downstream 151090 6888708 ~ 6889021 (-)
G233799 NA non-coding downstream 155597 6884308 ~ 6884514 (-)
G233843 NA non-coding upstream 23826 7072826 ~ 7073170 (-)
G233881 NA non-coding upstream 91012 7140012 ~ 7140351 (-)
G233896 NA non-coding upstream 128840 7177840 ~ 7178439 (-)
G233899 NA non-coding upstream 132769 7181769 ~ 7182120 (-)
G233907 NA non-coding upstream 143999 7192999 ~ 7198957 (-)
CI01000054_06629482_06641861 TRIQK other downstream 386098 6628082 ~ 6642160 (-)
G232274 NA other downstream 1830871 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2367878 4670151 ~ 4681361 (-)
G231645 NA other downstream 3057288 3981847 ~ 3982823 (-)
G230908 NA other downstream 3976768 3057648 ~ 3063343 (-)
G235216 NA other upstream 2199039 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2434147 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2814321 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3754871 10816015 ~ 10819362 (-)

Expression


Co-expression Network