G233904


Basic Information

Item Value
gene id G233904
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7220031 ~ 7226845 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU265395
AGGAGGATGAGATGAGTGTCCTGAAGCACTTAGTTAACACACCTGTCATGCTCACTAGCTGATAGTCAACTGAGTCAAATGATGATTATTATTATATTAATTACTATTATTATTATTATTATTATTGCTACTTCTATTTTCTGTTGATCTATAAACATTAACACAGTGCTGTATGCTGTATCATGAATTGGATGTTGTGTGGCACTCTGTGGGAAGGTGATAGCTCACGAGGGTCGCTATGAAAGGATGAATGTAACAGTTGATGAAAGAGCAAACAATGAGATTTTGTCCCCAAGAGGACTGCTCTAAAGGAAGCACTTTTTTCATTGCGTTTGATTGGCTTAGCCATCTCAAGCAAGCTGACAGCTTGAGTAAAGACGGGCACAAGAGGCCGTGACCCGTTAAACAACTGCCATTTAAGTCATTTAAAGCAAAAAGAGTCATATGAAAGTGTGAATGCAGATGGAAATAAATACAGAGACTGTTTATATATTTACAAGAGATGTGAGAGATGAAAGTGAGAAACTCTGGCTACAGAAATTTTTGGAGGATCGAAGGGTGTCATATACCTGTTTGTTAGCAATGTATGTGGTCGTGCACGCATGTGAGTTCGTGTGCATCTGCGCACGGGCTTATACACGCATAAATACGTACACGGTTACGGTAATTTTCAATCATGTTGAAATATGTCATGTATTTTTTGTACATTAACATGTATAGAACTGCATATGCTATATCTATCTTACTGTATGAGAGCGTAAGACTACATGAGCACGTTTTTAGTCCCGTCCCCCAAGACACTGACTCATCGAACGTATGTGAAAACAGTCATGTAGTAATTTCAGTGATCTGTAGAATATTTGTGTGAGTGTTGCGTGAGTGTTTGTGTGTGCGTGTGCGTGTGTGTGTGTGTGTGTACATACCACACATATTATAAATAGATATTTAAGTTCTACTTAAGAGAATATTGCAATTTGCACATCTGGAGAGATAGTAACATGATTTATTTTTGTTTTCTGCCAGCACAGGACAGGGCCGAAAACTCAATTTTTACTGAAATGTAGCAGTTTCTTGACATGTTTGCTTGGTTCGCAGGTCTGTTGGGTTCATTTTCATTAGGAAAACAAGAAAGAACCTTTTCGGGGGGTTCGAATTACACACAAACACATGAAGCAGGATTGTATACGGTGCTGTGTCGAGGCATTTGCTTCGTAGGTATGGATGAAGTCATAGCCTGTAGCCTGCATACTTGTCGAGTCATTCGAGCGGCCACACTCAAGTTAGCTTGGGTAGGTGAAGATCTGGCAGGAAGATGGGTAGTAGTAGAAAGTAAAAGATGCATGGATGGATGGATGGATTTAATGAGTGGTGGAGGGTGGGTGAGTGCACCCCATATACAATTTGAAAATGCTTTATTTTTTTATAATAAAACAGGGTTTCTCAGATCAACACCACAATCGTGCATTTTTTCTTTTTTTTCCATTTGACATGGCGTCTTTGTCCCTTTGTAATGTGTTTTAGTTTTACTTAGATTGTATGTGTGGATGTATCTGCTTCAACCAATCAAACTTGATATTTTCATTGTGTTTATTTTTTGGGCCAAAAGGTAGAAACAAGATGTGATATTGTTTGTCCAATGAACCACCCCAAGAACATGACTGTCAATGGCGAATCGGTCTTGCATTCGTTTTGTTTTTCTTATCTTTCACTGTTGTTCTTCTCTTGATCAGTGTTTCATTGCTTCGATCATTTTACAGTCTGCCTCCTTCTGGTTGCACAGTGCGGTTCCACGTACACGAGAAGCATTCCGAACAACGGCACGTAGCAATAACCCTTAGTCTCTAGTGCTGAACCAAAAAAAAAAACAAACAAACAGAGAACCGGACATCAATGCCAGATCTTCTGTTCGACCTCAGCAAGCTGTTTTTTATCCTCTTTAGGTTGATTTGCGGTTTGCACATCCAGCCCTCAGTATCTTCAGGGAGAAATGTAAATTAATATGCAGTGACAGAGTCTGTCCCCTCCTAGCCGTCTTAACCCATAATCGATAGTGACCTCCAGATCCTCTTCAGGTGCCCATACAGAACCAGTACGCCTCTCTCAGAGTATGTTTACCCAACCGCAACCGTTAGCTACCTTCTGTTGCCTGGCATGTACGTGCGACCTCTTTTTCACCCAGCACACCCGCTATAGTTGAAGAACGTTGTTTTCTTTTCTCTTTTTATCTGTCTTTCTCTCTCTCATTCATAGCCATAGAACCTTGACAGTATTTGTGATGGAGTTTCATATTGCCTAGCCTGTCGAAATTAGTTTTTTTTGTGGGGTCAAATATGACAGTAATTCACTTGTAACGGTAATACTCACCTAGCATACAAGTCAATGTGAATTGACATTTGAACCCATTTTGCTTCCATAATGTGATGTATTCCAGTTAAACAGAATATTCAATCAAGAATAGTGGGCTTTTCATATCAGAATGAATATGAGTTTGCTAAAACAATACCTAAATAGCTGGTTGGTTAAGATTATCCAATAGCCTGTGTAACAGACATAGGCCGGTAAGAGCTATGCGTGTAAACCTCACTCCCCTGATCTCAAGAGGTGCTCTATAGACTGCAGTCTTTAGCCTCCTTGTTAGAGTGCCTGACACCCATGCCTGCGGACCAGGGTTCGAGTCCTGCTTAGAGTGGATGGTTCGAACAGGAGGGGTTACACCTGCCTGGCCTTAGTGATGTCATTGGAAAAATAAAGTTGCTTTAAGTTTTTGCTATTTTTCTTTTCTTTGGAGTACCATGCACCGATGATTCGCTCACAAGAAGACCTGGAATGAGCATTGAGGAAGTAAATAGGTTTGATTTTGATTGATGTTGACTTTAAGTGTCACTTGTTATCAACCAGGAGACAAGCAAGTGTGTATGTTCAGTTTCAGGTATGTTATTTGTTTGCATTTGGAATTGTTACTTGAAGACATTTTGACGTTAATTTGATGTCACTGTTTGTTTATCTGATATTGAGGAACAAGTCCAACTGCAAATGAATTAAATATGCTTGACGTGCGATGACCTGAATGAATGAAACATCACAGATGTTCTGTGCCATCACTTTTGATGGTCATCACAAACAAAGAGAATAAAAGATGCACATGGTACAGCTGGCGGTTTATTGTGCTGATATTGATAGTCTCTTATGACCTCCAGTGCTGAGAGACGAGAAATAAAAGAACATTAAAAGTGGTGGCTGCTGTTTTGACACCTATTTTTTTTTTTAGCGTCAATGTCACATGAAACTCAAACCCCACTGGTGATGTTCTAAACTCTTCTTCTGTTTAAGCTTGACATGTTTCACGCGTAACAGTTTGTGCCATCTGCATGTAGCACTGTTTCTGTGGTTTCCATTCATATACCTTCTCCCACAAATTATATTCTTTGTAGCCTGTGGGTTTTATGATTTTATTTCACTGTTTGTGAGTAAACATGGCAAATATTGTGTTTCACTTTGTTGAAATGTTGCACATTTCTGCTTTTTTTCCCCCCTCAGTGTGTTTCATTTTCTTTGGCAGAGGGGTGAGTTTGCTGTTTCTGACATTATGACAACATCATTTGCTTTTCTGATAAAGGTCAAAATCTTTCCTTGGGCTTACTCAGGGATGGGAAATAGGTGTGAATGTGTGTCGAGGAGGTTGTGTGACCTTTGAAAGGTTTGTGTACATGTAAAGATATATATATATATATATATATATATACATACATATATTCTTGTGTGTGTTAAACTGCTGTAACCAGAAGCAGTCATTTCATTGGCCCTGTGCTTTGGTTTCCCAAAATGTCTCTACACCATATGAGGCCTTCCTAACACACTCTGTCCGTCTCCGTGTAAGCGTCTGTATCAGTCTGTTTGTCCCCATCACAAGCTGTCTGTCCGTCTGCCTGTTGTCCCTCTGACATCACAAGCCCAGATCCTCACACATGCAAGATACTGAAAAAAGACTGAGAAATGATTCATCGACCTCATCGAAGTGGGGACCACTTTTATAGAAACAAACGAAAACAAAATGCACATTTTTTTGTCATTTATAGAATAGATAGACTTGATAATACTGTTTCAGCACTTTCTAATCCCAAGGAAAATAGGGTGAGAGTATGGTGTCATCGCAGTTTCTCCCCTCCAATACGAATTCCCTCCGTCTCGGCCCGTTCCTGGGTCCAACGGGTTGAGACGACGAGGACAGAGAGTTGAAATAAAGTTTGAATGGTCCTCTACGAACCTGAGATGACTTTACTTTTTGTTGTACTGATGTGTGCTCGAACACCGTCGTTCTGTTTTGTTTTATTTTTATGTTGGTTCTATATTTGACCTTGCTTCATGTACTTTGGACTTTGTACTTTTGCTTCGGTCTCCTCTGTAGCACTCTTTTATCATGGTAGGAGACGAGAGAAAGTGTTTTAATGAATGTTTTTAAGAGAGGCTCTGTGACAGCTCTCTCTCTCTCTCTCTCTCATAAGAGGAGCACCGCTGACAATTTCCTTGTTTTTACTTTCATTTTTCTGGCACAAATGACAAAAAAAAAAAGACGAATGTTGGATTGCGAGTTTCAGCAGTTTGAAAAATAAATCAAAAGTTTTTCTTTTATTGTGGCTCTCATTGAAGAAAAAAAAACCCTTTATTTTGAGTTTGCTTTTCTTTAAAATTAGTTGTAAAATCAGTCAGGATTTCTCTGTTCAACTTGACTGTTGTTTGACATCTTGTCAATTGTCCAAACAGCTGGATTAATAACCTCAGGCTGAGAATCTTCTACAGGCCCACATTATGGTTTTGTTTCACCCTAACTTGATGTATGGGCTGCTTGATATGGGTATTGTAACTAGTCTTATTGTTAATGCTATAATTGATATATGATCATTCAGCTATATCAGTGCTGGATAGTGAAAGCAGTGCACCGGCCCTCGTCTCTCACGTCGTTTTGGTGAGCCGGTAAACTGACAAACGCTTCCTCAGAGAGAGGTACATCCTGTGTTCTGTCACCCTCATCTGGCCAGGCCTGTCCAGAGTACAAGAATGAGACTCGCGCAACCCTTCTCTGTTGAATCCTGAGGAGTATTTGTCACTGTTGGGTCAAACTGGACACTCAACCATGGTTAACCACTGAGAACTAAACGCCAGGGACGTACTGACCATCACAGGCCGGAACCGACTCGTGTACAGATGCTGTTTTCACATACCCAACGTCACCTTAACACATAGCAATCAACAGCCTTGTAATGTGTGTATTTATCCTTCAGAATTTGTACAACTACACTCTCAAGATAACATATCTTCAAGAAAAAAGGTCATTTTGTAATTCTGGATTTCTTGCCAATGAATGCTTAATAAGATGTCTCTGTAAAATTGTACTCTGTAAAATCTTTTTAGGCCTAATTTTAACATTTCCAGGTATGTTTTGTGTAGATTCTGAATGAATGGTGAAGGTAGTTTCTCATGAATTATCGCCCCGTGATTTTAAAGCTGAGGCCAGATAGACTATTAGCCGGATGTGAAATAACACTATGTACACCTTGTCAGGTGAACAGCGTCCGGTTGTCATCAAATGTGCACGCATGTCCAGCCACCTCTATTTTTTTTTCCTGTTTGTTTTCCCTTTTGAGATTGAAATGTTAAAGAAGTGTTTTGTGATGCACACAGGAAGCCATTGGTCATTCCTCAGGAAGGAGTGGGTTCAGATATAGCAGTAATACCCCAGGCTTGCTGGACTAGAGGTGTTGCAGGTCTTGTCATAAGGAGATTTGAAGTCTTCCATTGGAAGGGAAATGGAAGCTGTTTCTAGTTTCTTTTTTCACTTGCCATTGGGCAGAAAGATCCACGATCATAAAACCTCCTGATTGGACCTTTACCTACTGTTCAAAAAACATTGACTCAGTGGAGGTAGGTTGCCATATTGTCAGTGTTTTGTTTTCTCCATAGTTTCAGTGCTGTGGATTTACTGGACCTATAGTATGTTAGACATCATGTAGAAATGTTGAGCCAGACTGTTAAAGAAAAAATGAATGTCACATCCAATCCTGAGGTTCTATTTTCTTGGAATTGTATTTGAGGATTCTGGCCAGTAGCAAGCGATGGTTGTTGGAAACGGAAGTTGTGTTTTGCACCTTACTTAGTAAAGGAAAATAGATATAAAAAAAATACATAAAGAATAGGACATAATTGTGAAAGGCAATTTATTTGTTCTTTTGGTTCATTTTATTTCCATATGCGTGCATACTCTGTAAGTTGTGTAAAATATTGTACTTGCACTAGCTTTTTTAAGAAAGAAAACTAATATAAAAAAAAAATTGAATTGAAATTCTATTTTCTAATTGTGGTGTGTCTATTTGTAGGATACACTCACGTTGTTTCTTGGATTTTTTGGTCCCTTTCTTTGATGGTGCTTGCCGGTTTTCTAGTTAGAACTTATTTCATTATTCTGAACAACAAAACAATATTTGATTCAGGTTGTGAACAAATTTGTTTAAAAAAGAAATTGTCTGTATACCAGTACAAGTTTATTGTTGCAGTATACACGTACTAATAAAATTACAGTGCCAATTGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU265395 True 6585 lncRNA 0.39 2 7220031 7226845

Neighbor

gene id symbol gene type direction distance location
CI01000054_07165957_07169539 HEYL coding downstream 50492 7165435 ~ 7169539 (-)
CI01000054_07130499_07136946 NA coding downstream 83085 7130315 ~ 7136946 (-)
CI01000054_07080724_07095503 NA coding downstream 124358 7080352 ~ 7095673 (-)
CI01000054_07033076_07038297 STK3 coding downstream 181734 7031700 ~ 7038297 (-)
CI01000054_07026336_07030820 UK114, RIDA coding downstream 188522 7026147 ~ 7031509 (-)
CI01000054_07228008_07231489 ATXN1A, ATXN1 coding upstream 749 7227594 ~ 7231489 (-)
CI01000054_07311700_07314853 NA coding upstream 84695 7311540 ~ 7317174 (-)
CI01000054_07368294_07372480 FAM8A1A coding upstream 141247 7368092 ~ 7373799 (-)
CI01000054_07385840_07388475 PMP2, FABP11A, FABPH coding upstream 158947 7385792 ~ 7389417 (-)
CI01000054_07390631_07391977 MRPL53 coding upstream 163741 7390586 ~ 7393103 (-)
G233915 NA non-coding downstream 13851 7205908 ~ 7206180 (-)
G233907 NA non-coding downstream 21074 7192999 ~ 7198957 (-)
G233899 NA non-coding downstream 37911 7181769 ~ 7182120 (-)
G233896 NA non-coding downstream 41592 7177840 ~ 7178439 (-)
G233881 NA non-coding downstream 79680 7140012 ~ 7140351 (-)
G233922 NA non-coding upstream 111059 7337904 ~ 7338116 (-)
G233942 NA non-coding upstream 281523 7508368 ~ 7509658 (-)
G234023 NA non-coding upstream 339394 7566239 ~ 7566525 (-)
G234024 NA non-coding upstream 340111 7566956 ~ 7567186 (-)
G234025 NA non-coding upstream 340389 7567234 ~ 7567509 (-)
CI01000054_06629482_06641861 TRIQK other downstream 566018 6628082 ~ 6642160 (-)
G232274 NA other downstream 2010791 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 2547798 4670151 ~ 4681361 (-)
G231645 NA other downstream 3237208 3981847 ~ 3982823 (-)
G235216 NA other upstream 2021194 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 2256302 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 2636476 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 3577026 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 3644259 10871104 ~ 10881495 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G131820 atxn1,atxn1a,LOC107696220,LOC107724277,LOC107743820,LOC107702111 non-coding NC_056717.1 CM032086.1 9039948 ~ 9048451 (-)