G233030


Basic Information

Item Value
gene id G233030
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7786077 ~ 7812277 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU264441
CTGGAACATTGTCCAATAAAGACTGATACATTAAAAAATCTCAAATATCGGTAAAACATTTAGTATGCTTCAAGTCAGCATGAAAAGGAACTTAAGTTTAGTCTTTTCTTCTATATTGTGATGTATATCCAAGTGAAACGGCTTCTCAAACAAGAAAAAATGCAGGGCGGGGCTTGATTTTGTCCATCAGGAATCGATTGGATGGTTGTGGTTTGCTATTGCTGTGATGTCATGTGAGTGACAGGTTGTCCCGCCCTCACGCCAGTAAACACATCATCAGAGAAGAGATGTCGCTCTGGTTCGGGTCCTGCAGGTACGGGGGTGCGGTGGGTGTGACATTCCCCGAGTTCGGTGCTGACAACAATGGGGATCGTTCATCCATACCATCGGAAGCCATTATATCAGTAGATCAGCACAGAAAAACAACAGCAGCAGCAGCAGCAGCAGCAGCGACGAATGGTGGTGGGCTCCGTCCGCTGCTCTGGAGAGGGGCAGTGAGACTATGACCGCGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU264441 True 513 lncRNA 0.47 3 7786077 7812277

Neighbor

gene id symbol gene type direction distance location
CI01000054_07726558_07730944 TDP2B, TDP2 coding upstream 55066 7726558 ~ 7731011 (+)
CI01000054_07719547_07722201 C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537 coding upstream 63806 7719497 ~ 7722271 (+)
CI01000054_07675827_07711906 FAM65B coding upstream 74095 7675827 ~ 7711982 (+)
CI01000054_07620269_07633084 NA coding upstream 152966 7618737 ~ 7633111 (+)
CI01000054_07599184_07601743 HEY1 coding upstream 182952 7597906 ~ 7603125 (+)
CI01000054_07816225_07819805 TMEM106B, T106B, TMEM106BB coding downstream 3948 7816225 ~ 7820975 (+)
CI01000054_07836152_07845992 SCIN coding downstream 23327 7835604 ~ 7846232 (+)
CI01000054_07852818_07853423 ARL4AB, ARL4A coding downstream 40124 7852401 ~ 7854477 (+)
CI01000054_07997892_08012569 BZW2 coding downstream 185615 7997892 ~ 8012883 (+)
CI01000054_08013660_08018583 RBBP7, RBBP4.L, RBBP4.S, RBBP4 coding downstream 201383 8013660 ~ 8018741 (+)
G233025 NA non-coding upstream 49575 7734821 ~ 7736502 (+)
G233096 NA non-coding upstream 53973 7731855 ~ 7732104 (+)
G233018 NA non-coding upstream 269471 7514404 ~ 7516606 (+)
G233017 NA non-coding upstream 272377 7508766 ~ 7513700 (+)
G233065 NA non-coding upstream 364720 7420428 ~ 7421357 (+)
G233123 NA non-coding downstream 16993 7829270 ~ 7829472 (+)
G233127 NA non-coding downstream 20455 7832732 ~ 7832945 (+)
G233131 NA non-coding downstream 35264 7847541 ~ 7848125 (+)
G233132 NA non-coding downstream 36573 7848850 ~ 7849124 (+)
G233133 NA non-coding downstream 36854 7849131 ~ 7849454 (+)
G233024 NA other upstream 176184 7567523 ~ 7609893 (+)
G232870 NA other upstream 897574 6887912 ~ 6888503 (+)
G232659 NA other upstream 1410183 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 1479217 6305908 ~ 6312163 (+)
G232558 NA other upstream 1744214 5993660 ~ 6041863 (+)
G233306 NA other downstream 492322 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 493660 8325126 ~ 8329716 (+)
G235560 NA other downstream 2575859 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3752699 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 3820699 11632959 ~ 11635103 (+)

Expression


Co-expression Network