G233132


Basic Information

Item Value
gene id G233132
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 7848850 ~ 7849124 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU264553
CTTTTAGCATCAATAACTTGCAGTAATCATTTTCTGTATGACTTTATCAGTCTCTCACGTCATTCTGGAGGAATTTTGGCCCATTCTTCTTTACAACGTTGCTCCAGTTTATTGAGGTTTGTGGGCATTTGTCTCTGCACAACTCTCGCCACAGCTTTTGAGGTCTGGACTTGACTGGGCCATTGCAACACTTTGATTCTTTTCTTTTTCAGTCATGCTGCTGGTGATCTTCAGATCATTGTCCAGTTGCATGACCCAATTTTGGCCAAGCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264553 True 275 lncRNA 0.42 1 7848850 7849124

Neighbor

gene id symbol gene type direction distance location
CI01000054_07836152_07845992 SCIN coding upstream 2618 7835604 ~ 7846232 (+)
CI01000054_07816225_07819805 TMEM106B, T106B, TMEM106BB coding upstream 27875 7816225 ~ 7820975 (+)
CI01000054_07755766_07787767 NA coding upstream 60740 7755766 ~ 7788110 (+)
CI01000054_07726558_07730944 TDP2B, TDP2 coding upstream 117839 7726558 ~ 7731011 (+)
CI01000054_07719547_07722201 C11H6ORF62, CUNH6ORF62, C3H6ORF62, CLG10H6ORF62, C12H6ORF62, C23H6ORF62, C6H6ORF62, C18H6ORF62, CLG22H6ORF62, C6ORF62, CSGR19H6ORF62, C4H6ORF62, C24H6ORF62, C2H6ORF62, CLG11H6ORF62, C16H6ORF62, BC005537 coding upstream 126579 7719497 ~ 7722271 (+)
CI01000054_07852818_07853423 ARL4AB, ARL4A coding downstream 3277 7852401 ~ 7854477 (+)
CI01000054_07997892_08012569 BZW2 coding downstream 148768 7997892 ~ 8012883 (+)
CI01000054_08013660_08018583 RBBP7, RBBP4.L, RBBP4.S, RBBP4 coding downstream 164536 8013660 ~ 8018741 (+)
CI01000054_08056620_08072625 NA coding downstream 207382 8056506 ~ 8073345 (+)
CI01000054_08081739_08089067 NA coding downstream 232029 8081153 ~ 8089811 (+)
G233131 NA non-coding upstream 725 7847541 ~ 7848125 (+)
G233127 NA non-coding upstream 15905 7832732 ~ 7832945 (+)
G233123 NA non-coding upstream 19378 7829270 ~ 7829472 (+)
G233030 NA non-coding upstream 36573 7786077 ~ 7812277 (+)
G233026 NA non-coding upstream 55307 7791030 ~ 7793543 (+)
G233133 NA non-coding downstream 7 7849131 ~ 7849454 (+)
G233152 NA non-coding downstream 40456 7889580 ~ 7889810 (+)
G233180 NA non-coding downstream 81663 7930787 ~ 7931070 (+)
G233183 NA non-coding downstream 85261 7934385 ~ 7934637 (+)
G233198 NA non-coding downstream 131621 7980745 ~ 7981168 (+)
G233024 NA other upstream 238957 7567523 ~ 7609893 (+)
G232870 NA other upstream 960347 6887912 ~ 6888503 (+)
G232659 NA other upstream 1472956 6374850 ~ 6375894 (+)
CI01000054_06305908_06312122 NA other upstream 1541990 6305908 ~ 6312163 (+)
G232558 NA other upstream 1806987 5993660 ~ 6041863 (+)
G233306 NA other downstream 455475 8304599 ~ 8304949 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other downstream 456813 8325126 ~ 8329716 (+)
G235560 NA other downstream 2539012 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 3715852 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 3783852 11632959 ~ 11635103 (+)

Expression


Co-expression Network