XLOC_009932 (klhl38b)


Basic Information

Item Value
gene id XLOC_009932
gene name klhl38b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25245857 ~ 25250414 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019799
CAATGCAGACATGCTATGCAGACAGTGAAGAAACTTGTGTTATGGAAAAACAGAAGGGGTGAGGAGGTGTTAGCGGGACCAGCAGTTCTGACAGAGAGGAGAGGTTTCTATTTTTAGGGAGACTGGAATGTACATTGAGGCCTCTCGAAGGATTTCTCAACAACAAATAACATACCCGTGCTCGCCTCGGTCTCTATAAACATCCACCTGCCAAACTGAGAAAGTGAAGAACTTTCAGAAGTTTCGGAAAACAGAAGGACGAGTTTGAACTTTGCTTGAGGTTTGACGGTCGATTAATATTTAGAGGACTATCTAAAATGTGCTTCAAATCAGCTGAGACAAGCTTAGATGGTCCAGTATCAGAAATTCTGCATTTTAAAGACAAAGACCTGATCTCCAACCTTTTACTGGAGCTGAACACCTTGAGAAAGGACAGAATTCTCACTGATGTTGTTCTGTGCTCTGAGAACAAGGAGATCCCATGTCATCGCAATGTCCTGGTGTCCAGCAGCCCCTACTTCCATGCCATGTTCTGCAGCAACTTCCTAGAGACCCAGAAGTCCAGGATAAACCTTGAAGGAGTTCCTCATGAAATCCTCGCAATGATCGTGGAGTATGTCTACACAGGGTCCATCAGCATCAGCATGGAGCTGGTTCTCCCCCTGATTCAGACCGCCTCGATGCTTCAGTACGGAAGGCTTTTTGAGGCCTGTTCGACCTTCCTGCAGGCCCAACTCAGTGCAGACAACTGCTTGAGCATGATCCGCCTCTCCGAAATCCTGCATTGCTCCAGCTTGCATGAAAAAGCGAGAGAGCTGGCCATTAAGAGCTTCTCAGATGTGGTGGTCTCTGAGGACTTCTGCGAACTCTCACTGCCAGAACTGGTGAGTTACTTGGAGGACGATAAGCTGTGCGTTGAGGAGGAGCAAGTTTTTGAGACTCTTCTTGCTTGGATCCACCATGATCCGTTCTCCAGACATGGCACCATACACGATTTGTTCCGTCGCGTGAGACTGAGACACGTCCACCCTTATTATCTTTTCCAGTTCATTGCCAATGACCCTCTAGTTCAGTCATCATCTTTATGCACAGATATTATCGAATCCGTTCGTCGCCTTTTGTTTTCTGTCGGCACTCATTGTCCTGGTGATCTTGAGCCTCTGTGGAGGACGCCACGACGTCAGAACTGTAAAGAGGGGCTTGTAGTAGTTGGAGGTCGTAAGAATGGTGAACAGACATCCCGTGAGGCGCTACTCTATGATGAACAATCTCACTGTTGGAAATGGCTTGCAAAGATTCCTCTTCGGCTCTACAGGCCTGCTTATGTCTGCATGCACAGCATCCTTTACGTACTAGGAGGCTTAACAATGAAATCAGGAAGCCAATGCACACCCAGCAACACAGTCTACACGCTTTCTCTAAAAACAAATCAGTGGCGAATGGGAGAATCCATGCTGACGTCCCGATACGGCCATCAGAGCGCCACCTacctgcattttatttttgttctgggTGGATTGGGGGCTGATGGACAGCTGTCTAATGAGGTAGAGCGATACGACACTATGTTCAACCAATGGGAGGCCATGGCACCAATGCCCACTGCAGTTCTGCATCCTGCTGTAGCCGCACACAACCAGAGAATCTACGTGTTTGGTGGGGAAGACGCTATGCAGAAACCAGTGCGAATGATTCAGGTGTATCACATTGGAAGGAATATGTGGTGCAGGATAGAAAACAGGACAGTGAAGAATGTTTGTGCACCGGCTGCAGTGATTGATGATAAAATCTACATTGTAGGCGGCTATACAAGAAGAATGGTAGCTTATGATGTAAAAAGCAACACATTTGAGAAATGTGAAAATATGAAGGCCAGGAAGATGCATCACTCTGCGACGGTTGTGAACGGCAAGATCTACGTGACTGGAGGCCGTTTCTTCAACAGCCACGAGCGTGTAGAAGACTCAGACAGCTTTGACTGCTTCGACCCTAAGACAGACGCATGGACGTCAATGGGGAAATTGCCATTCAAGCTATTTGACCACGGCTCAGTACCTCTGGTCTATCTCTCTGATAAGTTTTTGCCGACATGA

Function

symbol description
klhl38b Orthologous to human KLHL38 (kelch like family member 38).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120727-8 Orthologous to human KLHL38 (kelch like family member 38).

Ensembl:

ensembl_id ENSDARG00000040278

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019799 True 2093 mRNA 0.47 4 25245857 25250414
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_009930 NA coding upstream 3547 25219435 ~ 25242310 (+)
XLOC_009931 NA coding upstream 10764 25233953 ~ 25235093 (+)
XLOC_009929 NA coding upstream 31879 25207618 ~ 25213978 (+)
XLOC_009928 tyrobp coding upstream 45100 25196572 ~ 25200757 (+)
XLOC_009927 hcst coding upstream 58048 25184207 ~ 25187809 (+)
XLOC_009933 fbxo32 coding downstream 8899 25259313 ~ 25272633 (+)
XLOC_009934 si:dkey-29h14.10 coding downstream 35584 25285998 ~ 25295185 (+)
XLOC_009935 tbc1d31 coding downstream 45975 25296389 ~ 25315136 (+)
XLOC_009936 dync1i1 coding downstream 66559 25316973 ~ 25337834 (+)
XLOC_009937 dre-mir-30d coding downstream 91002 25341416 ~ 25341543 (+)
XLOC_009913 BX539313.2 non-coding upstream 326900 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 347604 24898171 ~ 24898253 (+)
XLOC_009938 dre-mir-30b non-coding downstream 91310 25341724 ~ 25341811 (+)
XLOC_009942 NA non-coding downstream 294012 25544426 ~ 25550654 (+)
XLOC_009943 NA non-coding downstream 301908 25552322 ~ 25579827 (+)
XLOC_009948 NA non-coding downstream 580290 25830704 ~ 25831076 (+)

Expression

Expression of XLOC_009932(klhl38b) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Expression of XLOC_009932(klhl38b) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05781043_05784234 KLHL38B coding CI01000027 null 5780606 ~ 5784415 (+)