G234220


Basic Information

Item Value
gene id G234220
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8121178 ~ 8121700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU265730
TGACCATGATATTACTGTGCTTTATTGGCCAGCCAATATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCAGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATACGTCCTGCCGATCAAGTATTGAGTGCACAAAAGAACATACTTTAAAGAACTTTAACTTTTCTGTTTTGCAAATCCATTTTTTGATTGATTTTAGGAAATATTCTAATATTTTGAAATACTGGATTTTGGACTTTCATGAGCTGTACGCTCTAATCATCAAAATTAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTAAAAATAATTTATAATAAAAAAATGAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATATACAT
>TU265731
AAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCAGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATACGTCCTGCCGATCAAGTATTGAGTGCACAAAAGAACATACTTTAAAGAACTTTAACTTTTCTGTTTTGCAAATCCATTTTTTGATTGATTTTAGGAAATATTCTAATATTTTGAAATACTGGATTTTGGACTTTCATGAGCTGTACGCTCTAATCATCAAAATTAAAAAAAAAAAACTTTTGAAATGTTTTACTTTACATGTAGGGAATCTAGAATATATGAAAGTTTCATTTTTAAAAATAATTTATAATAAAAAAATGAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATATACAT
>TU265728
TGACCATGATATTACTGTGCTTTATTGGCCAGCCAATATGCCTGACCTGAATCTATGGGATATTTTCAAGAGAAAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCAGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATACGTCCTGCCGATCAAGTATTGAGTGCACAAAAGAACATACTTTAAAGAACTTTAACTTTTCTGTTTTGCAAATCCATTTTTTGATTGATTTTAGGAAATATTCTAATATTTTGAAATACTGGATTTTGGACTTTCATGAGCTGT
>TU265729
AAGATGAGAAACAGTCGATCCAACAATATACAGATGATCTGAAGGCTCAATAGTGCCTCAGCAGTGCCACAGGCTGATCACTTCCATGCCACACTTCACTGATGCAGTAATTTGTGCTAGGAGCAAGTCATTTGCTGTAATACGTCCTGCCGATCAAGTATTGAGTGCACAAAAGAACATACTTTAAAGAACTTTAACTTTTCTGTTTTGCAAATCCATTTTTTGATTGATTTTAGGAAATATTCTAATATTTTGAAATACTGGATTTTGGACTTTCATGAGCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU265730 False 523 lncRNA 0.32 1 8121178 8121700
TU265731 False 450 lncRNA 0.31 1 8121178 8121627
TU265728 False 359 lncRNA 0.38 1 8121342 8121700
TU265729 True 286 lncRNA 0.37 1 8121342 8121627

Neighbor

gene id symbol gene type direction distance location
CI01000054_08099220_08112291 NA coding downstream 8887 8097675 ~ 8112291 (-)
CI01000054_08091223_08096443 YARS coding downstream 24735 8090597 ~ 8096443 (-)
CI01000054_08032736_08043035 NA coding downstream 77862 8032385 ~ 8043316 (-)
CI01000054_08021522_08026014 NA coding downstream 95164 8020943 ~ 8026014 (-)
CI01000054_07985093_07994157 NA coding downstream 126247 7984803 ~ 7994931 (-)
CI01000054_08228712_08238666 FAM49A, FA49A coding upstream 106961 8228661 ~ 8238666 (-)
CI01000054_08272679_08293481 NA coding upstream 150819 8272519 ~ 8295165 (-)
CI01000054_08353876_08358232 NA coding upstream 231676 8353376 ~ 8358232 (-)
CI01000054_08375424_08376756 NA coding upstream 253371 8375071 ~ 8376980 (-)
CI01000054_08400578_08406066 NA coding upstream 278831 8400531 ~ 8406066 (-)
G234210 NA non-coding downstream 81381 8039399 ~ 8039797 (-)
G234207 NA non-coding downstream 89780 8030895 ~ 8031398 (-)
G234167 NA non-coding downstream 220398 7900538 ~ 7900780 (-)
G234065 NA non-coding downstream 284338 7836063 ~ 7836840 (-)
G234131 NA non-coding downstream 286557 7834072 ~ 7834621 (-)
G234268 NA non-coding upstream 89370 8211070 ~ 8211278 (-)
G234298 NA non-coding upstream 162572 8284272 ~ 8284602 (-)
G234320 NA non-coding upstream 182314 8304014 ~ 8304462 (-)
G234321 NA non-coding upstream 182903 8304603 ~ 8304960 (-)
G234322 NA non-coding upstream 207765 8329465 ~ 8333698 (-)
CI01000054_07165957_07169539 HEYL other downstream 949505 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1467165 6628082 ~ 6642160 (-)
G232274 NA other downstream 2911938 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3448945 4670151 ~ 4681361 (-)
G231645 NA other downstream 4138355 3981847 ~ 3982823 (-)
G235216 NA other upstream 1126339 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1361447 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1741621 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2682171 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2749404 10871104 ~ 10881495 (-)

Expression


Co-expression Network