XLOC_009934 (si:dkey-29h14.10)


Basic Information

Item Value
gene id XLOC_009934
gene name si:dkey-29h14.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25285998 ~ 25295185 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019802
ACTTATATGAGCGGTTTCGTTTTCATAAGCCATCAAAAAAACGCTTTCAGTTGACGTGTTGGCATTTTTGATGATTGTTAAAAGATGGACGGCACGGTTGTTTTATCTCCTGAAAAGCTTTTACAGCAATATTTGGGCTTCCTCAGTAAGTATATGACTGGGCCTTTAGTTCAGAAGATGTCCTGCTGTTTGTGCCGATCCAACAAAATCACCAAACATGAAGAACAGGTTATTACATCtcagtccacagacatgcagaAAGCCTCCAGACTGATTCAGATTGTCATTAAAAAGGGACAAAATGCGTGCAGCTCTTTTCTCAGTTGCCTTGGACTTTGCAACCCAGCATTGTATGAAAATGTCACTGGATTTCCCGCACACTTTAGTGACGAGGGTCATCAACATTTAGAGGAAATTCCTCTCTCAGATAAAGTGCAATTTACACCTTATATTATAAACATACAAAACTCTTCCCTGAGCAACTGCATTATTGGGAACAACAATAACCAATGCATTGCCTGTGATCAGCATGCTCTGCTTCCTCAGAATGATGCAATCAGCGaGGAAGAAACGGCAGATCCTCAGAGCCATGATCAGCTGATCCCACCGCAGGACACAATAAGTGGCAGCAGCATCATTCAAGTGGAGAAATCCAGCATGGAGTATGTCATTATTGGGGACCACAACAGCATGACGGTCACAGAGAGCTGTGACTCAGATGTTGAGGAAAATACAGAGACTGAGGCTGACATGATCAGTTAAAAGGTGTGAAATGGTGATCAGGGGAAATTCAGCTCGACCTATGATTGTACACTGGAAGGATATATTTAACATGCCTTCTTTTGACCGATGCTTTGGTGCTCAGGCAGAGCTTATTTTACACTTCTGTGCTATGAgctgaaactgtttttttttcctgattgaTACTGAACTGAACTATGTTTCTCATGTTTTAATGAGTACAGCAATGTTTATTGTTTTAGCTGAAGTATCTGAAAAGATGCTGGCTGACATCGTAATAATGTATTATGTAGTCTTTTTATAAGCTCTCTGCGAACATAGATGCTCTGTatgctttttacattttatcttaatgcaaaataataataataacatgtaaagcacCTTGTAAAACctatgaaattatttaattaagatgaactatttcgtttttaaaactaaatctttagtGATTTGACTGCTGGATTGCTCCTAGATTGAATTCAAACATGTAATATTACATTCAAATTAAAAGTTTTAGACCCTCACCATAcgaaatatgatagaaaacattgttatacatAATTTATAGGAATCttttatacttctaggtatttatttgggaGCCCTCAAAGTTCCTGGAGCCCTAAGCAGCCACTTACCTTATTGGTTCAATCCGCCCCTGTTTACTCTagtacaggggtcaccaacatggtgcccgaaggcaccaggtagcccgcgaggatcacatgtgttgcccgcaggtctgttctaaaaatagctcaccgtagcgccacttaccagtaagcttcatctaatatagaagtaatcatttaaaaatgtaaatatttgcagagatatataaaaataaagtgttgcacattgatacattaaatacagggtatttcctaccctgttaattcattgttgataacttttgtgagaatcattaacatgataagtgtcttcacatggatgaatatcattaattattaccaaaaacaaagtataattaaaagtaaattgagcaaatgtgttatttgagaagtgtttatcaaactggtagccctccacattgatcggtacccaagaagtagctctcagtttcataaaggttggtgacccctgctctagtaaTATCTGTTCTTATGATGTATTGAACGTTATTCTATTATAATGTCTCTGTGTATTCCTGTAAGAATAGTGATAGATTCAATCTTTTTGTTGtgggaaaaaaagttatttttatgaataaaacaGTCTTATTTTTTATACTGAG

Function

symbol description
si:dkey-29h14.10 Predicted to act upstream of or within regulation of apoptotic process.

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-252 Predicted to act upstream of or within regulation of apoptotic process.

Ensembl:

ensembl_id ENSDARG00000096959

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019802 True 1999 mRNA 0.37 5 25285998 25295185

Neighbor

gene id symbol gene type direction distance location
XLOC_009933 fbxo32 coding upstream 13365 25259313 ~ 25272633 (+)
XLOC_009932 klhl38b coding upstream 35584 25245857 ~ 25250414 (+)
XLOC_009930 NA coding upstream 43688 25219435 ~ 25242310 (+)
XLOC_009931 NA coding upstream 50905 25233953 ~ 25235093 (+)
XLOC_009929 NA coding upstream 72020 25207618 ~ 25213978 (+)
XLOC_009935 tbc1d31 coding downstream 1204 25296389 ~ 25315136 (+)
XLOC_009936 dync1i1 coding downstream 21788 25316973 ~ 25337834 (+)
XLOC_009937 dre-mir-30d coding downstream 46231 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b coding downstream 46539 25341724 ~ 25341811 (+)
XLOC_009939 zfat coding downstream 46967 25342152 ~ 25360788 (+)
XLOC_009913 BX539313.2 non-coding upstream 367041 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 non-coding upstream 387745 24898171 ~ 24898253 (+)
XLOC_009942 NA non-coding downstream 249241 25544426 ~ 25550654 (+)
XLOC_009943 NA non-coding downstream 257137 25552322 ~ 25579827 (+)
XLOC_009948 NA non-coding downstream 535519 25830704 ~ 25831076 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05805062_05805690 NA coding CI01000027 null 5805062 ~ 5806023 (+)
eurasian perch (Perca fluviatilis) G23911 NA non-coding NC_053113.1 CM020910.1 44812153 ~ 44816376 (-)
mexican tetra (Astyanax mexicanus) G24022 NA non-coding NC_035899.1 CM008302.1 36328588 ~ 36329869 (+)