G234322


Basic Information

Item Value
gene id G234322
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8329465 ~ 8333698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU265849
TTCAGTAGACATCCACATATTTAATTCTCTATGTAACAAAAATAATTACACGTCTTTGTTCAAGGAGCTTAACGATATTGAAAAAGTGAACAGAAACCAGACATTTGAAATGCACAGCAACACATACAGTACAGAAAGCACACTGTATTGCACGACTGGACACAATTAATCCCTTTTCAGTAATTTTTTGGGTACATAATCAGAATCTGCACTGGATGGTTATACATGTGACCAACCTACATTACATTTTTCACGCTGTATTATAAATGTAAAAGCAATCAAAATACATTTTCAATTAATTGGGTTAATAAAATTTAATCATATATCTCCAATTTTATGTTTTATAAAGTCTTTGGCACAGAAAATCTCTCAGTGGACTTTAGCAGTGGCATGTATAGAGTCAGTTTAGTGGTAAATCAACACATTGCACAGCATCCACCGGGCCCATTTTGCACTTCCCATAATCATTACCCATGACCATAACTGTGTTTATGTAATCTAATCACAGTGATCATTAGATGTTCAGATGGTCAAGATTTCAGACCATACATTGAGTTGAGTTGGTACAGATCTGAACTGCGGTAGTAGATAAAATTCAATGTCTTGAAAAGAATATGACTGTCCCTTGTGAAAAAGAAGTACACTTTAGAATACTTTATAACTTATTACGGAAATAATACGTTAAAAGAATATACTTAAATGCAAAGCAAATATAATGTTTTTGGACACTTAATTGCATGTTAAGTGCAATTAAATGAGAATGTATTACAGTTTAAATAGATATGAAATGCATTTATCTGAACTAGAGTGCTTTTTGGCCCACTTAAGTAGGACTTACAGTAAGTACATCTTTATATGTAATTTCATAATTACTTCTTTTGTCTTTGAAATATGTTTAAAGTGTACTGCCCAAAGTACTGACAAGCATTTATTCACTAAAATACACTTCATGTAATTTCTGTTGAAACTTATGTCATGTATTTAAATATATTTGTAATTACACAAATTGCAAATGAGTACATATTAACTTTTTAATGTAATATAACACACTACAGTTAAATGGTGTACACCCAAAAATGAAAATTCTGGGTGAACTATCCCTTTAAATTATACATCCCTTTAACACATCCAAATCAGTGTACTTCTTTAAAGCACAACAAAAGATTAAAACATGGTGATTTAAAATGTACTTTAAAGTAAAACTTTTAATTTGACACTTCTTTTTCACAAGGCATAGCACATTTAGCACAAGAAACCTACTTTGTGACATAATAAGAAAGAGATTACCCTTGTTGCTCATGAGCAGAGATGTAAAACAGCGACAAAGGTGTGTGAATGTGACAGGAAATACATCCCACACAGATTTCACAAGATTGTGAATAGTGTAAAAGCAGTTATGACAAAATGTGAGTAAAGAAATTGCTTAAACTGCTGTTACGGAAAATGTAACATCACAAGATATGCTGCAAAATGAACCATTTTGAGTATTGCTAAACTACTTTCACTATTGAAAAATAAGTCACTCATTGATTAACTAAACATGAATAATCATTGCTATTGTGTGGCACAATGTTCCAGTAAGACATCCTCAATGTGATCTAGAAGTATATTGTGGTTTTGAGAGGGATTCTCGCTAAGATTCACAGATTTTATGGATGGGTATCCTTTCCCCTGGACCTATATCACACGGGGAACTTAGCTGGACCCTCTCGCCCCCCTGACGGCCCTGGTTCTGAGTGAAATCATATGCTGAACTCGGAACCATATACTAGCATACCACTCTTACAACATTTACCATATCTTTATATGGCATAAATAGTGAGAGAGTAGTATGCTAGGGTCTTCTGCTGAAGTTGATTAACATCTTTCACCACAGGGAGGCAGTCTAAAACTAAAGCTGTTTTGCCTCTACTCACTATGTAGTGCAACAGTATTCTCATGTTATTAAGTATAGCGCCATAGTAACATTGACAAGTACTACACATTCTGCGTCTGGTTTACATTTGTGTCCACTTATATTACAAGAGTAAAGAAAGGTAATTCAACATTGACAATATTCATACAATTAAAATCCTTTTGGCTGACACTTGCTAAGCTTGTGAAATAGGAGATGAACCAATGAAGACTGAACTAAACTAAAGCTCTCATGACAAAAACAGCTCACCAGCCATACCAGGTGACAACAAACACTACGGCGTAATACTCCTAGCACTGGCGTGAAGATCATAAGAAAGAATTAATACAAAGGTTGAGGCATTTGTGTTCTCTTACGTGAACTCACACTCTCACACTGCGGCTTTCACACCTGATTGCAAAGAAGAAACTGCACACATTAGCTTCCCTCTTCAGACAGACCCACATACATAAGTACAGTAAAGTTTTTGTGTTAGCACACAAATCATTGCAGCTGTGTCAGATTATGAAAGCAGTTCTAAGGTAGAGAAACATTTACATGTACATATTAAGCATGTGTATAGGCATTATGTACACTTAATGTACATATATTGTCAGTTCTCTATCTAATAAACGCTACTCCTTATTTTCTGACATGATCCGTCACTGAATGTCACCCTTTTACTCAGCCGTGGCTTTTTAGTTTTATCTCTGCCAATAACATGATTAGAAGATGGCTATGCTTCATGATGGTATCGTTAGATTATGGCAATGTGTTCAAACAGTATTACTCAAGTGGGGTAGAGCGCTGTATATGAAGGCACCCGCAAATGTCAAAGGATTCAGTCCTGCCCAGAACTCTGAACTTTCTACATTTCCCCTTTCTAATGCTCTTCCTCAGGCACAACCTGTAATCAGGCATGTTGCTGCTCTGACATTTTCAATATAGAATAAATAAATAAATTCCAAAGATTATATAATATTTAATAGGGATGCACGGTATAAATGTTTGGCTGATGCCAGTAAGCAAATAATTATTGTTATGGCGGAAATACGGAAGCCCTAAGAAGCCATGCATTATTTTTCTTTTTTGTTTTTTCTTTTGACACATCTTCTGTATATAAATTAACAGCATATAAATTAAATTCCATTTTGTCTAAATAAATTAAAAATAAAACATGAAATGTTTTAAATGCTACAGGTGAATTTGGGCATCACATTATGATGTGTAATAGATATTCATTTTGAGATTTGCTAAAGATTGCATTTATTAAATTATTATTGTTTTTAAAGATTAAGTGTTGGATGATTATCTAAATGTAAAAACTAGTTAAAGAGCATACACAATTAAATATCCAAATACTAGGCGATTATACATACAATATCAACCAATAAATAAATAAAAATCTAATTTCAGAAGATAGCTAGTATAGTACCGACATATCGTGCATCCCTAATGTATATTTTCATCCTTTGCCTTTTGTATCCTTATCTTGGATTAAAATGAATCATTATCAAATTATTTATTTATTTATAATTATTAAATTAAATTGTTTAAATTCCTGAAAGAAACAGATGCCTGTCTTTTGGCTCAAAAGTGACTTTTCTGAGGAAAGAAATGTATTGTATTAATGATTCAATCTTTCTGACTCTCTCTAAGGGCTGGAAAGCAGACAAAATGTGTAACAAGTGATACAGGATTGAAAATATTCTTTCTTGCATTACTTTGACTAATCATTCCAAATGGCCTTAATCACTTCCAAGATTACCATGCAGTCTAACTTCTGTTCAACTGTATATACACTTTCTCTCTATTTATCATCTATTACCTACATCTCTCAAGAAGTCTGTACATGGTTCTCCTCCCCTCCCTACACCCCCAGCCCCCTTCACTCATCTTCCTCCTCTCCTTCCTTACTTCTGCATGTCACATTGCAGTAAAAGAACAATGGAGGGGTCACTCTTGGCCGCCTCTTTGAACTCTTCCAGCGTGATCTCATCGTTGTGGTCTTTGTCCATCTTGCTGAAGATTTTGTCCACGCGCTGCTGTGGGGTCAGCCCGTCCTCGTTC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU265849 True 3964 lncRNA 0.34 2 8329465 8333698

Neighbor

gene id symbol gene type direction distance location
CI01000054_08272679_08293481 NA coding downstream 34300 8272519 ~ 8295165 (-)
CI01000054_08228712_08238666 FAM49A, FA49A coding downstream 90799 8228661 ~ 8238666 (-)
CI01000054_08099220_08112291 NA coding downstream 217174 8097675 ~ 8112291 (-)
CI01000054_08091223_08096443 YARS coding downstream 233022 8090597 ~ 8096443 (-)
CI01000054_08032736_08043035 NA coding downstream 286149 8032385 ~ 8043316 (-)
CI01000054_08353876_08358232 NA coding upstream 19678 8353376 ~ 8358232 (-)
CI01000054_08375424_08376756 NA coding upstream 41373 8375071 ~ 8376980 (-)
CI01000054_08400578_08406066 NA coding upstream 66833 8400531 ~ 8406066 (-)
CI01000054_08425960_08439362 NA coding upstream 92245 8425943 ~ 8439430 (-)
CI01000054_08574533_08590975 NA coding upstream 240782 8574480 ~ 8591292 (-)
G234321 NA non-coding downstream 24505 8304603 ~ 8304960 (-)
G234320 NA non-coding downstream 25003 8304014 ~ 8304462 (-)
G234298 NA non-coding downstream 44863 8284272 ~ 8284602 (-)
G234268 NA non-coding downstream 118187 8211070 ~ 8211278 (-)
G234220 NA non-coding downstream 207765 8121178 ~ 8121700 (-)
G234347 NA non-coding upstream 97943 8431641 ~ 8431991 (-)
G234350 NA non-coding upstream 103878 8437576 ~ 8437778 (-)
G234351 NA non-coding upstream 105120 8438818 ~ 8439062 (-)
G234352 NA non-coding upstream 105979 8439677 ~ 8439959 (-)
G234353 NA non-coding upstream 107286 8440984 ~ 8441202 (-)
CI01000054_07165957_07169539 HEYL other downstream 1157792 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 1675452 6628082 ~ 6642160 (-)
G232274 NA other downstream 3120225 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 3657232 4670151 ~ 4681361 (-)
G231645 NA other downstream 4346642 3981847 ~ 3982823 (-)
G235216 NA other upstream 914341 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 1149449 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 1529623 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 2470173 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 2537406 10871104 ~ 10881495 (-)

Expression


Co-expression Network