G234543


Basic Information

Item Value
gene id G234543
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8779321 ~ 8779587 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU266078
TAGTTACTTAGGCCCATTATGTGTGTCTGATATGAATAAATGTCGGCAATTTATAATTGAATGGATTGTTATTGCTGCTTCCTCTGATGTCTGACATCAGTGTGTATTTTATAAACTCTAAATGTATTGTTTTACTGGTGCTTATGCGTATTCAAATGTCTGAAACCTTAAAAGAAACATTATGTGGCTGAAAACACTGCATAGCTGTGATATATGACAAGAGCTGAGCGCGTCCGTCTCGCAGCGAAAGCACAGTTTGAATCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266078 True 267 lncRNA 0.38 1 8779321 8779587

Neighbor

gene id symbol gene type direction distance location
CI01000054_08725294_08727378 NA coding upstream 51491 8725164 ~ 8727830 (+)
CI01000054_08704697_08709175 EIF3I coding upstream 69972 8704697 ~ 8709349 (+)
CI01000054_08695322_08702750 TXLNA coding upstream 76012 8695322 ~ 8703309 (+)
CI01000054_08675009_08686170 KPNA6 coding upstream 92642 8675009 ~ 8686679 (+)
CI01000054_08485645_08496381 NA coding upstream 282456 8485428 ~ 8496865 (+)
CI01000054_08908112_08917294 FNDC5B, FNDC5, FNDC5A coding downstream 128525 8908112 ~ 8917595 (+)
CI01000054_08969979_08973590 NA coding downstream 190392 8969979 ~ 8973666 (+)
CI01000054_08975450_08984634 E2F3 coding downstream 195772 8975359 ~ 8985175 (+)
CI01000054_09151300_09164780 NA coding downstream 371198 9150785 ~ 9164938 (+)
CI01000054_09232327_09233391 SOX4A, SOX4 coding downstream 452412 9231999 ~ 9234242 (+)
G234541 NA non-coding upstream 945 8778161 ~ 8778376 (+)
G234536 NA non-coding upstream 6294 8772821 ~ 8773027 (+)
G234495 NA non-coding upstream 142157 8636936 ~ 8637164 (+)
G234490 NA non-coding upstream 159093 8619942 ~ 8620228 (+)
G234482 NA non-coding upstream 181144 8597970 ~ 8598177 (+)
G234577 NA non-coding downstream 42147 8821734 ~ 8822062 (+)
G234602 NA non-coding downstream 100762 8880349 ~ 8880654 (+)
G234606 NA non-coding downstream 152786 8932373 ~ 8932635 (+)
G234588 NA non-coding downstream 194422 8974009 ~ 8974677 (+)
G234636 NA non-coding downstream 287991 9067578 ~ 9067907 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 449733 8325126 ~ 8329716 (+)
G233306 NA other upstream 474372 8304599 ~ 8304949 (+)
G233024 NA other upstream 1169428 7567523 ~ 7609893 (+)
G232870 NA other upstream 1890818 6887912 ~ 6888503 (+)
G232659 NA other upstream 2403427 6374850 ~ 6375894 (+)
G235560 NA other downstream 1608549 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 2785389 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 2853389 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 2868392 11647959 ~ 11649495 (+)
G236874 NA other downstream 3034101 11813688 ~ 11816475 (+)

Expression


Co-expression Network