Item | Value |
---|---|
gene id | XLOC_009939 |
gene name | zfat |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007127.7 |
NCBI id | CM002900.2 |
chromosome length | 55266484 |
location | 25342152 ~ 25360788 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
zfat | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing). |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0046872 | metal ion binding | molecular_function |
GO:0003676 | nucleic acid binding | molecular_function |
GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
id | description |
---|---|
ZDB-GENE-130204-2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing). |
ensembl_id | ENSDARG00000077987 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00019807 | False | 3701 | mRNA | 0.47 | 16 | 25342152 | 25360788 |
TCONS_00019808 | True | 3437 | mRNA | 0.48 | 13 | 25343934 | 25360767 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_009938 | dre-mir-30b | coding | upstream | 341 | 25341724 ~ 25341811 (+) |
XLOC_009937 | dre-mir-30d | coding | upstream | 609 | 25341416 ~ 25341543 (+) |
XLOC_009936 | dync1i1 | coding | upstream | 4318 | 25316973 ~ 25337834 (+) |
XLOC_009935 | tbc1d31 | coding | upstream | 27016 | 25296389 ~ 25315136 (+) |
XLOC_009934 | si:dkey-29h14.10 | coding | upstream | 46967 | 25285998 ~ 25295185 (+) |
XLOC_009940 | jarid2a | coding | downstream | 46233 | 25407021 ~ 25500729 (+) |
XLOC_009941 | mylipb | coding | downstream | 175205 | 25535993 ~ 25548738 (+) |
XLOC_009942 | NA | coding | downstream | 183638 | 25544426 ~ 25550654 (+) |
XLOC_009943 | NA | coding | downstream | 191534 | 25552322 ~ 25579827 (+) |
XLOC_009944 | zhx2a | coding | downstream | 247990 | 25608778 ~ 25643226 (+) |
XLOC_009930 | NA | non-coding | upstream | 99842 | 25219435 ~ 25242310 (+) |
XLOC_009931 | NA | non-coding | upstream | 107059 | 25233953 ~ 25235093 (+) |
XLOC_009929 | NA | non-coding | upstream | 128174 | 25207618 ~ 25213978 (+) |
XLOC_009948 | NA | non-coding | downstream | 469916 | 25830704 ~ 25831076 (+) |
XLOC_009949 | NA | non-coding | downstream | 598108 | 25958896 ~ 25960158 (+) |
XLOC_009954 | NA | non-coding | downstream | 713923 | 26074711 ~ 26080716 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000027_05836494_05847115 | NA | coding | CI01000027 | null | 5836494 ~ 5847601 (+) |
bowfin (Amia calva) | AMCG00021760 | NA | coding | CM030130.1 | CM030130.1 | 28767415 ~ 28804176 (+) |