XLOC_009939 (zfat)



Basic Information


Item Value
gene id XLOC_009939
gene name zfat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25342152 ~ 25360788 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00019807
ATCCGCCATATTTGTTGTCGCAGATTCGACAGAAACCCCTGCAAGAAGTAATTTAAGCACAATGAATGCTTTAAAATGGCTCGATAGTTGTAAGAACAAAGATCAGAAATATTTCCGAGGTGTTTTTATGCATTACTGATTTAAAAAGAATGGATACAGCGCAAGCAGATGGTTCGTCAGTCTTCATGTGCAAAGGCTGCAACTTGTTCTCTCCCAAAAAAACACTGCTGCTCTCTCATGTTGTTGAGGCTCACTCCAGTGAAGGAGGAGATCCTGAGACCTTCATTATAGCACTTAAACCATTAACAACTCAGGAGACCCAGAATTCAGAAGTCGTTGTGAAAAGAAAGCGTGGAAGACCCAAAGGCTCCACTAAGAAAGCCCAACTAGAAAAGGTCCAGAAAAACACGTGCGGTCTGCAGGAAGAAGAGTCCAGTCAAAGCCAGCCGGCTACAGCAGCTAAAGAGCAGACAGAGGATGCCAATGATCTGGAGTGCAAGAAGTGCAATCGCATGTTCAGCAACCGGCGACAGATCTCCAAACACATTTGTTTTGTAGGACTGAAAGACGCTGCTGATGAAGAAGAGTTTAATGGTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTGGTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAGGTTAGGACAGACACAGCTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCTCACTTAAGAATCCACACCAACGAGAAACCCTTTAAGTGCATGCAGTGTGACTACGCCAGCGCCATAAAGGCTAATCTTAGTGTTCACATGCGCAAACACACCGGAGAGAAGTTCAGCTGCGACCTCTGCTCGTTTAACTGCCTCAGTAGAGGACACCTCAAAGTGCACGTAGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAATACTCAGACGTCAAAAACCTTCTGAAACACATCCGCGAGTCTCACGATATGAGCGACAAGAAAGTGCAGGAATCCTACGAAGAATACAGCCTTCAGACCAGGGAAGGCAAGAGGCAGCTTCTGTACAACTGTGAAATATGTGACCGGAAGTTTAAGAACGAGCTGGAGCGTGACCGTCACATGATGGTCCACGGCAGCAAGAGACCCTTCGGCTGCGAGTTATGCGATCACGGCTCCACAAAATACCAAGCCTTGCAAGCCCACATCCGAAAGCATCCCTTCATCTATGTGTGCGCCATTTGCCAGGAAAAGTTTGTCAGCTCTGTTCGGCTGAGGTTGCATCTCCGAGAGCTCCATCAGGAGTTGGATGAGCTTTCAGCGTTTGCAGACTCCATCAAATCCAGCTTTTGCTTGCTTAAGCCAGGTGATGACATTCAAAAGGACATGTTGAGTCAGGATGAGCTTAAAATCACAGAGGAGCTGTCGCAGCTCAATGCCCAGGAGCTGTTGACCACTGAAATGAGCTGTATGGCTCAAGAAGACCTTCAGTCTCAGTGCTCGGAGAGTTTAGTGGTGGAGTCGGACCTTCTCGCAGAGAACTCGCAAGAGATGGATACATGTGCAGTTGCGCAAACGCAAGAGATGGCCTGTGAAGATgccataaatacgcaaataactCAAGATGAACCACTTGAAGTGCAGAGCAGCGTGACAAAAGAAGAACAGACTCCTGTTCAGGAAACTGTTGCTGAAAATGCACAAACAGACCCAGAGCAGCTCCCAGAGGAGCATCAAAATGAGCTAATTACACAAGCTAATGCAGAACTACACATTTCAGAGCAAGAGGAAATATCTGCTTTCAAACAGATCCTAGAACAGATGCAGAAACGACAGCTTAACATGGAAGTGTTTGAACGGATTCGGAAAGTGTACGGAGATCTTGAATGTGAATACTGTGGTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATAGTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAGATGTGCCATTGAACGTCATCTCGGAGGCATTGGGGATACGCGTACATGTGAAAGGAGTGATCGGGAAACGAGCATCCAAATGCCCATATTGTGACTATTTCTTCACCAGGAATGGCGCTGACCTTCAGCAGCACATATGGGCTCATGAAGGACTTAAGCCATTTAAATGCTCACAATGTGATTATGCCTCAAGAAGCAAGAGCAACCTCAAAGCTCACATGAACAGACACAACACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCCAAATGCACTCTGAAAAGCCATAAGCTTATGCACACAGCAGACGGAAAACAGTTCAGATGCACTGAGTGTGACTTCACTGCTGCTCTGAAGCCGCATCTCCTTCGTCACATGGAGCAACATGCCTCTTTTAAACCTTTCCGTTGCGCACACTGCCACTACTCATGCAACATTTCAGGCTCGCTGAAAAGACACTATAACAAGAAACATCCCAACATGCAGTACATCAATGCTGGAACAGGGGCATCTGCTTCTGAATCTGTGACAGAGCAAGGTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAGGTGGTGGAGACTGACAGTCTGGGTCTCAATCAGTGGGAGGTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATGGTGTTGTGTCTGCAGCAGCAGGAGACAGGCTAGATCCAGCATCAGTCAACATTCTCCAGCAGATCATCGAGCTGGGCTCTGAGAATCACGATGCCACTGTGGCCTCTGTGGTGGCAATGGCTCCTGGCACAGTCACTGTTGTAGAGCAGGTGGAGGAAGAGGAGCCTCAGAGCAATCATGCCATGATGATACAGGATGCACTGCAGCAGGCTACCGTGGGTCTGGGAGAAGAGCACCATCTAGTGGTGTCATCAGATGACATGGAAGGGATCAAAACAGTCACAGTTTACACGCAGGGAGAAGACGCTTCCCAGTTCATAGTCTACGTTCAGGAAGCAGTTCAGGAGGCTGTGCAGACTGAGGAGACCACGgtataaacattattaaagccATGCATA
>TCONS_00019808
AAGTCGTTGTGAAAAGAAAGCGTGGAAGACCCAAAGGCTCCACTAAGAAAGCCCAACTAGAAAAGGTCCAGAAAAACACGTGCGGTCTGCAGGAAGAAGAGTCCAGTCAAAGCCAGCCGGCTACAGCAGCTAAAGAGCAGACAGAGGATGCCAATGATCTGGAGTGCAAGAAGTGCAATCGCATGTTCAGCAACCGGCGACAGATCTCCAAACACATTTGTTTTGTAGGACTGAAAGACGCTGCTGATGAAGAAGAGTTTAATGGTCATAATGTGGATGCAGGAAGAATCAGTGATGGAGAGGAAGACAGAGAGCGGACGCCAAAGAAAGCTCGAGCGATGCGGACAGATAAGGTGTCCAGTGCAAAGGACGCAGAATCAACAAGCGGCAACAAAAATCCTATTATTAGTGTAGTCCTTACCAGTCACGAGGCCATGCCTGGTGAGATACACATGCTCTGTCTGTCAGGTGCTCTGAGCACTGAATGAAACACTGACACTGACTGTAAGTTTCTGTGTTTTGTCGTAGGTGCCTCGAAGATTGTTCCCATTGAAGCAACTCCAGCTGAACCACCGTCTACTCAGACTGACGCCACTGCAGCTTCTCAGGAGGCAGCGATTAAAAGAGGATATCAAGAATATGCCATTCAGCAGGCTGCTTATGGAGAGCCTCTCAAATCAAACAGGTTAGGACAGACACAGCTTAAAATCTTCACTTGTGAATACTGCAATAAAGTCTTCAAGTTCAAACATTCACTGCAGGCTCACTTAAGAATCCACACCAACGAGAAACCCTTTAAGTGCATGCAGTGTGACTACGCCAGCGCCATAAAGGCTAATCTTAGTGTTCACATGCGCAAACACACCGGAGAGAAGTTCAGCTGCGACCTCTGCTCGTTTAACTGCCTCAGTAGAGGACACCTCAAAGTGCACGTAGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAATACTCAGACGTCAAAAACCTTCTGAAACACATCCGCGAGTCTCACGATATGAGCGACAAGAAAGTGCAGGAATCCTACGAAGAATACAGCCTTCAGACCAGGGAAGGCAAGAGGCAGCTTCTGTACAACTGTGAAATATGTGACCGGAAGTTTAAGAACGAGCTGGAGCGTGACCGTCACATGATGGTCCACGGCAGCAAGAGACCCTTCGGCTGCGAGTTATGCGATCACGGCTCCACAAAATACCAAGCCTTGCAAGCCCACATCCGAAAGCATCCCTTCATCTATGTGTGCGCCATTTGCCAGGAAAAGTTTGTCAGCTCTGTTCGGCTGAGGTTGCATCTCCGAGAGCTCCATCAGGAGTTGGATGAGCTTTCAGCGTTTGCAGACTCCATCAAATCCAGCTTTTGCTTGCTTAAGCCAGGTGATGACATTCAAAAGGACATGTTGAGTCAGGATGAGCTTAAAATCACAGAGGAGCTGTCGCAGCTCAATGCCCAGGAGCTGTTGACCACTGAAATGAGCTGTATGGCTCAAGAAGACCTTCAGTCTCAGTGCTCGGAGAGTTTAGTGGTGGAGTCGGACCTTCTCGCAGAGAACTCGCAAGAGATGGATACATGTGCAGTTGCGCAAACGCAAGAGATGGCCTGTGAAGATgccataaatacgcaaataactCAAGATGAACCACTTGAAGTGCAGAGCAGCGTGACAAAAGAAGAACAGACTCCTGTTCAGGAAACTGTTGCTGAAAATGCACAAACAGACCCAGAGCAGCTCCCAGAGGAGCATCAAAATGAGCTAATTACACAAGCTAATGCAGAACTACACATTTCAGAGCAAGAGGAAATATCTGCTTTCAAACAGATCCTAGAACAGATGCAGAAACGACAGCTTAACATGGAAGTGTTTGAACGGATTCGGAAAGTGTACGGAGATCTTGAATGTGAATACTGTGGTAAGCTTTTCTGGTACCAAGTGCACTACAATACACATGTGCGAACACACACGAGAGAGCACCTCCATTACTGTTCTCAGTGCAGTTATTCCTCCATCACGAAAAACTGCCTGAAGCGGCACGTCATTCAGAGGCATTCAGACATCCTGCTGAAGTGTCCCTCTGAAGGATGCCAATACTGCACACCTGATAAATACAAGCTTCAGGCTCATCTCAAAACCCACTCGGACATAGTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAGATGTGCCATTGAACGTCATCTCGGAGGCATTGGGGATACGCGTACATGTGAAAGGAGTGATCGGGAAACGAGCATCCAAATGCCCATATTGTGACTATTTCTTCACCAGGAATGGCGCTGACCTTCAGCAGCACATATGGGCTCATGAAGGACTTAAGCCATTTAAATGCTCACAATGTGATTATGCCTCAAGAAGCAAGAGCAACCTCAAAGCTCACATGAACAGACACAACACTGAGAAAACACATCTTTGTGACCTCTGTGGGAAAAAGTTCAAGTCCAAATGCACTCTGAAAAGCCATAAGCTTATGCACACAGCAGACGGAAAACAGTTCAGATGCACTGAGTGTGACTTCACTGCTGCTCTGAAGCCGCATCTCCTTCGTCACATGGAGCAACATGCCTCTTTTAAACCTTTCCGTTGCGCACACTGCCACTACTCATGCAACATTTCAGGCTCGCTGAAAAGACACTATAACAAGAAACATCCCAACATGCAGTACATCAATGCTGGAACAGGGGCATCTGCTTCTGAATCTGTGACAGAGCAAGGTGGAGTGAAATGTCCTGTATGCAATTATGTTTATGGCACTAAATGGGAAATGAATCGACACCTGAAGAGCAAACATGGACTGAAGGTGGTGGAGACTGACAGTCTGGGTCTCAATCAGTGGGAGGTAGTGGAGTCAGTGGAGGAGCCGACTATGCAGTACCTGCATATAGCTGAGACTGAAGATCCACAAGGAACTGAGACGGCTGTATCAGCTCTGCAGGACCTGCGATTCAATACACAAAATGGTGTTGTGTCTGCAGCAGCAGGAGACAGGCTAGATCCAGCATCAGTCAACATTCTCCAGCAGATCATCGAGCTGGGCTCTGAGAATCACGATGCCACTGTGGCCTCTGTGGTGGCAATGGCTCCTGGCACAGTCACTGTTGTAGAGCAGGTGGAGGAAGAGGAGCCTCAGAGCAATCATGCCATGATGATACAGGATGCACTGCAGCAGGCTACCGTGGGTCTGGGAGAAGAGCACCATCTAGTGGTGTCATCAGATGACATGGAAGGGATCAAAACAGTCACAGTTTACACGCAGGGAGAAGACGCTTCCCAGTTCATAGTCTACGTTCAGGAAGCAGTTCAGGAGGCTGTGCAGACTGAGGAGACCACGgtataa

Function


symbol description
zfat Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130204-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in autoimmune thyroiditis. Orthologous to human ZFAT (zinc finger and AT-hook domain containing).

Ensembl:

ensembl_id ENSDARG00000077987

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00019807 False 3701 mRNA 0.47 16 25342152 25360788
TCONS_00019808 True 3437 mRNA 0.48 13 25343934 25360767
Loading

Neighbor


gene id symbol gene type direction distance location
XLOC_009938 dre-mir-30b coding upstream 341 25341724 ~ 25341811 (+)
XLOC_009937 dre-mir-30d coding upstream 609 25341416 ~ 25341543 (+)
XLOC_009936 dync1i1 coding upstream 4318 25316973 ~ 25337834 (+)
XLOC_009935 tbc1d31 coding upstream 27016 25296389 ~ 25315136 (+)
XLOC_009934 si:dkey-29h14.10 coding upstream 46967 25285998 ~ 25295185 (+)
XLOC_009940 jarid2a coding downstream 46233 25407021 ~ 25500729 (+)
XLOC_009941 mylipb coding downstream 175205 25535993 ~ 25548738 (+)
XLOC_009942 NA coding downstream 183638 25544426 ~ 25550654 (+)
XLOC_009943 NA coding downstream 191534 25552322 ~ 25579827 (+)
XLOC_009944 zhx2a coding downstream 247990 25608778 ~ 25643226 (+)
XLOC_009930 NA non-coding upstream 99842 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding upstream 107059 25233953 ~ 25235093 (+)
XLOC_009929 NA non-coding upstream 128174 25207618 ~ 25213978 (+)
XLOC_009948 NA non-coding downstream 469916 25830704 ~ 25831076 (+)
XLOC_009949 NA non-coding downstream 598108 25958896 ~ 25960158 (+)
XLOC_009954 NA non-coding downstream 713923 26074711 ~ 26080716 (+)

Expression


Expression of XLOC_009939(zfat) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_009939(zfat) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05836494_05847115 NA coding CI01000027 null 5836494 ~ 5847601 (+)
bowfin (Amia calva) AMCG00021760 NA coding CM030130.1 CM030130.1 28767415 ~ 28804176 (+)