G235064


Basic Information

Item Value
gene id G235064
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 8897888 ~ 8912476 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU266627
CAAGATATAAACTCACAACGTTGCAATTCCCAAAATGGTACTCTGAAGTACTTCAAAGAAAACCATGGTACTATTATGGTATTATGGATTATTATGTCTAAAAATGGGTAATTTTGGCAGTTTTTTGTTAGTGCTGCTGGCTTACCTGGGCTTTTGGAGGCCAGTTTCTCTGACTCTTTGGGAGTGCGGAACAGAACAGGTTCACTCAGGGGGCTGGTGCCGCTCATGCTAATGGACTGCACATGCACAATGTACTCTGTGTCTTCCTCCAAGTCCCATAATGCACATGAACGAGTGGTGGTGTTCACTTCCTGGATGAATCGCAGCATACGTACGTCCTTCTTCTGCTGGGTGATGGCAAACCCGATGACTGGGTCTCCTTCCAGAATGTCCCATGTCACTATCGCTGAGTTCCCCTCCAGTGCTTTGATGGTCACATTGAGTGGAGCAGATAAACTGTCGGCGTAAACCAAGGACACGGAGATATAAGCCAAAAACAACAATAACAGCGCAGCACACGAGCCTTTAATTCCCCACATCCTTCAAGGAATTCTTTACATTCTGTTCGGAAGACGTTGAATCCCATTTACTCGCAAGATTTTTAAACTTATAAGTCGGCGTCTATGTGTTTAACATTCACGACTGGTTGCCGTCTTTATTCCTGCATCAGTCCAGAACAGCACTGGATCTAAACTCCGTACTTGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266627 True 707 lncRNA 0.45 3 8897888 8912476

Neighbor

gene id symbol gene type direction distance location
CI01000054_08721571_08723333 NA coding downstream 173806 8721008 ~ 8724208 (-)
CI01000054_08710955_08718087 HDAC1, HDAC2.S, HDAC2, HDAC1.S coding downstream 179801 8710787 ~ 8718087 (-)
CI01000054_08692653_08694052 NA coding downstream 203836 8692139 ~ 8694052 (-)
CI01000054_08652832_08667152 NA coding downstream 228959 8652789 ~ 8668929 (-)
CI01000054_08574533_08590975 NA coding downstream 306596 8574480 ~ 8591292 (-)
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding upstream 24836 8937312 ~ 8942587 (-)
CI01000054_08953766_08966617 TMEM57, TMEM57A coding upstream 39658 8952134 ~ 8966617 (-)
CI01000054_09077309_09080163 NA coding upstream 164355 9076831 ~ 9080812 (-)
CI01000054_09218869_09223868 NA coding upstream 306156 9218632 ~ 9224119 (-)
CI01000054_09453616_09482480 LPCAT1 coding upstream 539633 9452109 ~ 9482723 (-)
G235061 NA non-coding downstream 2351 8894973 ~ 8895537 (-)
G235060 NA non-coding downstream 3293 8894156 ~ 8894595 (-)
G235049 NA non-coding downstream 22348 8875272 ~ 8875540 (-)
G235041 NA non-coding downstream 34385 8863172 ~ 8863503 (-)
G235026 NA non-coding downstream 49254 8848284 ~ 8848634 (-)
G235084 NA non-coding upstream 61537 8974013 ~ 8974310 (-)
G235080 NA non-coding upstream 61917 8974393 ~ 8974682 (-)
G235096 NA non-coding upstream 74625 8987101 ~ 8987407 (-)
G235097 NA non-coding upstream 75201 8987677 ~ 8987940 (-)
G235099 NA non-coding upstream 76421 8988897 ~ 8989099 (-)
CI01000054_07165957_07169539 HEYL other downstream 1726215 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2243875 6628082 ~ 6642160 (-)
G232274 NA other downstream 3688648 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 4225655 4670151 ~ 4681361 (-)
G231645 NA other downstream 4915065 3981847 ~ 3982823 (-)
G235216 NA other upstream 335563 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 570671 9483147 ~ 9484282 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 950845 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 1891395 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1958628 10871104 ~ 10881495 (-)

Expression


Co-expression Network