XLOC_009940 (jarid2a)


Basic Information

Item Value
gene id XLOC_009940
gene name jarid2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25407021 ~ 25500729 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019809
CGGATCCTCCTATGAAAGACGCCACTAGGTCGCATTAACATCGGTGCCATTGAGTTCACACAATATGAGGGAGCACAGCGGCAGGCAAAAACCAACTCCAGATTTTTCAAATCGGTGCGTTTGGCCGTTTTGTACCCGCATAATGTAACAGTAAACGACACGTTACGAGCTACGAGAATGGGAGCCAAAAGCTGGCTTTTATTTTGACTGCAAGAATGTGGTGCGGGGAGCCCTGACAATACGCCGTTCAGCTTTCAAATGGAAGATTGGCTATTCCAGCTCGTTTCGGTGGAAATGTTGCCGCTGCTTTTTTCACACAGACCCTTTTTAATCGCCATGGATCTTCGGATTTGGATTCTTTTACCTCTGTCGTGTCTTGGGCTGTGAAAAAGAGAAAGACAGGCTACGCCGATCGACCGGGATACAACGTTCTCTGCCTACCTCGACATTTTGCTACCAGGGATTTAAATAATCACGTGCTACAACAACGGAAAGATTTTTTCTTCTTAATAAGAATTGATGTGGCCGTCTGACCTTTAATGAGTTCAACCTGGAGGGCAAAATGAGTAGGGAAAGGCCGAAGAGAAATATCATTCAAAAGAAATTTgatGATAATGATGGGATCCCGTGGTCAGAAGAGAGAGTGGTCCGCCGGGTGCTCTACCTCTCACTTAAAGAGTTTAAAACGGCTCAGAAGAGTAAAGTGGAGAACGGCACTGGAAGAGTTAATGGCTCCTTTGCTAATGGTCATCTGAATGGATCGGGCACTAAAGCTGGCCTGTTTGTGGGAAGCTGTAAGTCAGAACGGACCCAGCATGCAGTGCAGAGCAAAGAGCGCAACCATGAGTTCTCTATGGACGGGCCTGCCAGGAAGAAGCCAAGACTGCAGGCTCAGAGGAAGTTTGCTCAGTCTCATCCGTGCTCACCAAACGCCACCCCGCTGAAGGTGCTGGACGCCCTGAGCCCGACCCCTGCCGCCCTGCTCAACCATCTCACACGACGCAAACCCAAAACGGAAGACTTCCTCACCTTCCTCTGTCTGAGAGGCTCTTCTGCGCTGCCCAGCAACATGACATACTTTGGTAGCGCTAAAGATGATGAAGATGTGGATGAGGAAGAGgatgaggaagaggaagaagaaagtGCCAGCCACGCCCCTGCTTCCTGCCAGTCCACTCCACGCAAGAGCAAAGGACCCAACAAATGCATCGCCAACGGTCATGtgtttaatggACAGACACGAGCTGCTGAGGTGCGCGAGAGCAGTCTGAGAGCCAGAGGGAAAGACGGGAAGGAGAAACACCCTGTAGCATCAGCTAGAAGCTCCACTACACACAATCTACGACCCAACAGAGCAGTGCAAGAACAAAAACAACAGGCCTCCAAAATGAACGGGACATCGGGAGCCTCCGCCGTCAGTTCTCGAAAGACGAGAGAACTGCGAACTCCCCCGACCAAAGCTGTGAAATACCCCAAGGGCCACGTGACGTACACCAAAGCCAGACTGCTCAAAGAGGCCAAGCTCAgcctgagcacacacacacacacacactctcagaccTCCAACTCAGGAAAAGCCCAAACCAGCCACGCCAAGATGCAAAAACAGGTGCTATCACCAGCAACCGCTGGACGGCTCAGTGGGACAGACACTTTCCCCCCGAGACGAAACGGACTTCGGCAGTCAAAGAGGCAGCTGGAGTTAGCCGGAGCAGAGGTCGAGGTGAAGAGGGTCAAGGTGCACGTGGTTCCTTTGGAGACCCGCAGTAGGAAAGCAGCTCAGGAGACGCAGGCCAGACCGCAACCGGCGGGATCACAGCGGCCCAAACGGGCATCGGCCGGGAAGCTCATGTTCACTAAACAGATGCACTGCAAAGCCAGCGTTCTGGCCAAGAACAGCCCCACTACCTCAACACGAGACATTCTGAGACCAGCCAACTCCCCCAAACTATCAGAGACCCCCAGAACAAGCAATGCTCTAAAACAAGGCCATCCTTCAAATATGACTGAGCCCTTCTCATCTGAGCCCAAGGAGCGAGGCCGGCGCAGTGCCGAGATCACGGAGCTGCCCGTCTTTTATCCCAACACACATGAGTTTCATGACCCGTTGACTTTTATGGAGTTGGCACGGGGGCAGGCCGAGGCGTTTGGGTTGTTCCGGGTTGTTCCGCCAGCAGGCTGGCGTCCCGAGTGTAAGCTTAAAGAGGAGATGCGCTTTGTCTCATACGTGCAGCATGTGCACAAGCTGGGCAGACGCTGGGGCCCCAATGTACAGCGGCTGGCCTGCATCAGGAGACACCTGCGGACACAAGGCATCAACATGGAGGAGCCTCCACTTATAGGTGGCTGCGAGCTGGACCTGGCCAGATTCTTCCAGATCATTAATGAAATGGGAGGCATGCAGCAAGTGACAGACCTGAAGACGTGGGGCCGGCTGGCGGATTTGCTGGGCATCCCACGCTCTGCTCAGGATCGGCTGGCCAAGCTCCAGGAGGCTTACTGCCAGTACCTGCTGTCTTACGACTCCCTGACCCCAGCGCAGAGGGCACAGCTGGAGAAGGAGGTGCTGGCGGAGAAGGAGGCCCTGGAGAGAAGAAACGGGCCCCTCGAGGGCCAGGGAGACATAGCCCAGCATGCCGCTCTGCAGCTTCCTCGCTGTGAGCCCAAAAACGGACTGGTGAACGGAGCGCTGCACCGAAGCGGAGCGCGAGAACACCTCCGAGAGCTCGACCCCACGGCCAAAAGCACCCGGCAGAAGAGACTGGAGAAGAGAGGAGAGGAAGAAGGGATGATCAGTGAACAACACAAGTGCATATACAGGGGGAAATCATTCTCTTTGACAACATTCTTCAGGGCAGCCAGGAACACTATGAACATGTGCTTCAGCAAAGAGCCGGACACGGCTGAAGTCGAGGTGCGTCTCACTGCCAGATTTTTCTTTCAAGAGCGGAAATCtgtgaaatgtatattttcttttaataataattcttgtTTTTGTCAACATCTACAGAAGGAGTACTGGCGATTGGTTGATGAAAAGGAAAGCCATGTTGCTGTGCACTGTGGAAGAGTTGACACAAAGACTCATGGGAGTGGATTTCCTGTGGGCAAGTCTGAGCCATTTTCAAAGCATGGATGGAATCTTAATGTCCTTTCCAATAACTCAGGATCCATCTTACGTCATCTTGGTGCTGTGCCAGgGGTGACCATCCCCTGGCTGAACATAGGCATGGTCTTTTCTACCTCATGCTGGTGTCGGGACCAGAACAGCCTTCCGTATATTGATTATCTACACACTGGTGCTGACTGCATTTGGTACTGTATTCCAGCTGAAGAGAAATCCAAACTTGATAAAGTAGTTCACACACTGCTACAGGCTAACGGCACTCCAGGGCTGGAGATGCTGGAGAGGAACATTATGATTTCTCCAGAGGTGCTCCGTCGTAAAGGGGTGAAAGTGTACCGGACAGTGCAACACAGTGGCCAGTTCATGGTTTGTTTCCCAGGGACGTTTGTGGCTAAAGTGTGTTGTGGCTACAGCGTCTCAGAGACCATGCACTTTGCCAACCTCCAGTGGATGAAACTGGGCTATGAGGCAGCTAAGGATCTGAAACGGCGTCGTATTGAGGAGCCTTTTTCAACAGAGAAACTGCTCTACCAGATCACCACATGTGAGCGGGACAACAAGCAGCTCATGACTGCCGTCTCCAGTCTCTTCAGAGATCTCAGggatgCAGAGATTCGCCAGCGCAGGGAGCTGTTTGAGGCTGGGCTCCGTCTGTCTGCCAGATACGGCACAAACTGTGAATCTCCTACAGAGAGGAGGAAGCAGCAGCGCTCCAGATTCACTGAAGACACGGCCGACAGACGCTGTCAAGTGTGCCAGCATCTCTGCTACCTCTCTATGGTGGTTCATGAGAGTGATAATGTGGTTTTCTGTCTGGAGTGTGCGCTCCGCTACATCCAGAAACGCAGGTCTCCCCGCGGCCTCAAGATGATGTTCCGCTACTCTGAGGAGCAGCTCAACAGTCTGGTGAATCGAGTGTGTGGCCGAACTCTGGATAAAGCTGGAGTCAAGCAGAGAAGCGTCGGCCCCAGCAAAACACCAGCAAAGCGAAGCCCCAGAAACAAGAGCTCGGGTCCCGTCCCCCTGTCCAGCTCGGGCCGCTCATAA
>TCONS_00019810
CACAATATGAGGGAGCACAGCGGCAGGCAAAAACCAACTCCAGATTTTTCAAATCGGTGCGTTTGGCCGTTTTGTACCCGCATAATGTAACAGTAAACGACACGTTACGAGCTACGAGAATGGGAGCCAAAAGCTGGCTTTTATTTTGACTGCAAGAATGTGGTGCGGGGAGCCCTGACAATACGCCGTTCAGCTTTCAAATGGAAGATTGGCTATTCCAGCTCGTTTCGGTGGAAATGTTGCCGCTGCTTTTTTCACACAGACCCTTTTTAATCGCCATGGATCTTCGGATTTGGATTCTTTTACCTCTGTCGTGTCTTGGGCTGTGAAAAAGAGAAAGACAGGCTACGCCGATCGACCGGGATACAACGTTCTCTGCCTACCTCGACATTTTGCTACCAGGGATTTAAATAATCACGTGCTACAACAACGGAAAGATTTTTTCTTCTTAATAAGAATTGATGTGGCCGTCTGACCTTTAATGAGTTCAACCTGGAGGGCAAAATGAGTAGGGAAAGGCCGAAGAGAAATATCATTCAAAAGAAATTTgatGATAATGATGGGATCCCGTGGTCAGAAGAGAGAGTGGTCCGCCGGGTGCTCTACCTCTCACTTAAAGAGTTTAAAACGGCTCAGAAGAGTAAAGTGGAGAACGGCACTGGAAGAGTTAATGGCTCCTTTGCTAATGGTCATCTGAATGGATCGGGCACTAAAGCTGGCCTGTTTGTGGGAAGCTGTAAGTCAGAACGGACCCAGCATGCAGTGCAGAGCAAAGAGCGCAACCATGAGTTCTCTATGGACGGGCCTGCCAGGAAGAAGCCAAGACTGCAGGCTCAGAGGAAGTTTGCTCAGTCTCATCCGTGCTCACCAAACGCCACCCCGCTGAAGGTGCTGGACGCCCTGAGCCCGACCCCTGCCGCCCTGCTCAACCATCTCACACGACGCAAACCCAAAACGGAAGACTTCCTCACCTTCCTCTGTCTGAGAGGCTCTTCTGCGCTGCCCAGCAACATGACATACTTTGGTAGCGCTAAAGATGATGAAGATGTGGATGAGGAAGAGgatgaggaagaggaagaagaaagtGCCAGCCACGCCCCTGCTTCCTGCCAGTCCACTCCACGCAAGAGCAAAGGACCCAACAAATGCATCGCCAACGGTCATGtgtttaatggACAGACACGAGCTGCTGAGGTGCGCGAGAGCAGTCTGAGAGCCAGAGGGAAAGACGGGAAGGAGAAACACCCTGTAGCATCAGCTAGAAGCTCCACTACACACAATCTACGACCCAACAGAGCAGTGCAAGAACAAAAACAACAGGCCTCCAAAATGAACGGGACATCGGGAGCCTCCGCCGTCAGTTCTCGAAAGACGAGAGAACTGCGAACTCCCCCGACCAAAGCTGTGAAATACCCCAAGGGCCACGTGACGTACACCAAAGCCAGACTGCTCAAAGAGGCCAAGCTCAgcctgagcacacacacacacacacactctcagaccTCCAACTCAGGAAAAGCCCAAACCAGCCACGCCAAGATGCAAAAACAGGTGCTATCACCAGCAACCGCTGGACGGCTCAGTGGGACAGACACTTTCCCCCCGAGACGAAACGGACTTCGGCAGTCAAAGAGGCAGCTGGAGTTAGCCGGAGCAGAGGTCGAGGTGAAGAGGGTCAAGGTGCACGTGGTTCCTTTGGAGACCCGCAGTAGGAAAGCAGCTCAGGAGACGCAGGCCAGACCGCAACCGGCGGGATCACAGCGGCCCAAACGGGCATCGGCCGGGAAGCTCATGTTCACTAAACAGATGCACTGCAAAGCCAGCGTTCTGGCCAAGAACAGCCCCACTACCTCAACACGAGACATTCTGAGACCAGCCAACTCCCCCAAACTATCAGAGACCCCCAGAACAAGCAATGCTCTAAAACAAGGCCATCCTTCAAATATGACTGAGCCCTTCTCATCTGAGCCCAAGGAGCGAGGCCGGCGCAGTGCCGAGATCACGGAGCTGCCCGTCTTTTATCCCAACACACATGAGTTTCATGACCCGTTGACTTTTATGGAGTTGGCACGGGGGCAGGCCGAGGCGTTTGGGTTGTTCCGGGTTGTTCCGCCAGCAGGCTGGCGTCCCGAGTGTAAGCTTAAAGAGGAGATGCGCTTTGTCTCATACGTGCAGCATGTGCACAAGCTGGGCAGACGCTGGGGCCCCAATGTACAGCGGCTGGCCTGCATCAGGAGACACCTGCGGACACAAGGCATCAACATGGAGGAGCCTCCACTTATAGGTGGCTGCGAGCTGGACCTGGCCAGATTCTTCCAGATCATTAATGAAATGGGAGGCATGCAGCAAGTGACAGACCTGAAGACGTGGGGCCGGCTGGCGGATTTGCTGGGCATCCCACGCTCTGCTCAGGATCGGCTGGCCAAGCTCCAGGAGGCTTACTGCCAGTACCTGCTGTCTTACGACTCCCTGACCCCAGCGCAGAGGGCACAGCTGGAGAAGGAGGTGCTGGCGGAGAAGGAGGCCCTGGAGAGAAGAAACGGGCCCCTCGAGGGCCAGGGAGACATAGCCCAGCATGCCGCTCTGCAGCTTCCTCGCTGTGAGCCCAAAAACGGACTGGTGAACGGAGCGCTGCACCGAAGCGGAGCGCGAGAACACCTCCGAGAGCTCGACCCCACGGCCAAAAGCACCCGGCAGAAGAGACTGGAGAAGAGAGGAGAGGAAGAAGGGATGATCAGTGAACAACACAAGTGCATATACAGGGGGAAATCATTCTCTTTGACAACATTCTTCAGGGCAGCCAGGAACACTATGAACATGTGCTTCAGCAAAGAGCCGGACACGGCTGAAGTCGAGAAGGAGTACTGGCGATTGGTTGATGAAAAGGAAAGCCATGTTGCTGTGCACTGTGGAAGAGTTGACACAAAGACTCATGGGAGTGGATTTCCTGTGGGCAAGTCTGAGCCATTTTCAAAGCATGGATGGAATCTTAATGTCCTTTCCAATAACTCAGGATCCATCTTACGTCATCTTGGTGCTGTGCCAGgGGTGACCATCCCCTGGCTGAACATAGGCATGGTCTTTTCTACCTCATGCTGGTGTCGGGACCAGAACAGCCTTCCGTATATTGATTATCTACACACTGGTGCTGACTGCATTTGGTACTGTATTCCAGCTGAAGAGAAATCCAAACTTGATAAAGTAGTTCACACACTGCTACAGGCTAACGGCACTCCAGGGCTGGAGATGCTGGAGAGGAACATTATGATTTCTCCAGAGGTGCTCCGTCGTAAAGGGGTGAAAGTGTACCGGACAGTGCAACACAGTGGCCAGTTCATGGTTTGTTTCCCAGGGACGTTTGTGGCTAAAGTGTGTTGTGGCTACAGCGTCTCAGAGACCATGCACTTTGCCAACCTCCAGTGGATGAAACTGGGCTATGAGGCAGCTAAGGATCTGAAACGGCGTCGTATTGAGGAGCCTTTTTCAACAGAGAAACTGCTCTACCAGATCACCACATGTGAGCGGGACAACAAGCAGCTCATGACTGCCGTCTCCAGTCTCTTCAGAGATCTCAGggatgCAGAGATTCGCCAGCGCAGGGAGCTGTTTGAGGCTGGGCTCCGTCTGTCTGCCAGATACGGCACAAACTGTGAATCTCCTACAGAGAGGAGGAAGCAGCAGCGCTCCAGATTCACTGAAGACACGGCCGACAGACGCTGTCAAGTGTGCCAGCATCTCTGCTACCTCTCTATGGTGGTTCATGAGAGTGATAATGTGGTTTTCTGTCTGGAGTGTGCGCTCCGCTACATCCAGAAACGCAGGTCTCCCCGCGGCCTCAAGATGATGTTCCGCTACTCTGAGGAGCAGCTCAACAGTCTGGTGAATCGAGTGTGTGGCCGAACTCTGGATAAAGCTGGAGTCAAGCAGAGAAGCGTCGGCCCCAGCAAAACACCAGCAAAGCGAAGCCCCAGAAACAAGAGCTCGGGTCCCGTCCCCCTGTCCAGCTCGGGCCGCTCATAAACCACAACATTCCTCTCCTTTTATATCAGGTGTTCCTAATACTTGTGTACAAACACTCTTCAATACTCTTTGTACCTAGTGTATAATATCAATACAACAATCTGTTCTATTGCACTTTTGTATTACAGATGCGTGTAGTTGCCGGCTGGTTAGTCAATATATTGAATGTACGGAGGTTCAGTGTTACATCGCGTTTCGTGTCGAATACACAACTGTTTGGGGCACCTGACATAAGACTATTGGGTCTCATTCAACAAGCACGACCTTTTGCACTAGTATTGAGATTGGTTTTTAGATGAGTATTTTCGGGTTGTTTTAGCATTAAATCGAGTATAGATATGCGTatacatagatataaatatatccTATACTATTCCTATCATTTGTGTTTAACTGGTGCTGTAGTGACACTTTTCTCCATCACCCTTAAAGCCTGTTGGTCTCTTGGGCTTATGGTTATTATGGCTTAAAGC

Function

symbol description
jarid2a Predicted to enable histone demethylase activity. Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0035097 histone methyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0032452 histone demethylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061218-1 Predicted to enable histone demethylase activity. Predicted to be involved in chromatin remodeling. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human JARID2 (jumonji and AT-rich interaction domain containing 2).

Ensembl:

ensembl_id ENSDARG00000060925

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019809 False 4174 mRNA 0.53 17 25407021 25500256
TCONS_00019810 True 4493 mRNA 0.52 18 25407079 25500729

Neighbor

gene id symbol gene type direction distance location
XLOC_009939 zfat coding upstream 46233 25342152 ~ 25360788 (+)
XLOC_009938 dre-mir-30b coding upstream 65210 25341724 ~ 25341811 (+)
XLOC_009937 dre-mir-30d coding upstream 65478 25341416 ~ 25341543 (+)
XLOC_009936 dync1i1 coding upstream 69187 25316973 ~ 25337834 (+)
XLOC_009935 tbc1d31 coding upstream 91885 25296389 ~ 25315136 (+)
XLOC_009941 mylipb coding downstream 35264 25535993 ~ 25548738 (+)
XLOC_009942 NA coding downstream 43697 25544426 ~ 25550654 (+)
XLOC_009943 NA coding downstream 51593 25552322 ~ 25579827 (+)
XLOC_009944 zhx2a coding downstream 108049 25608778 ~ 25643226 (+)
XLOC_009945 nsmce2 coding downstream 163349 25664078 ~ 25672591 (+)
XLOC_009930 NA non-coding upstream 164711 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding upstream 171928 25233953 ~ 25235093 (+)
XLOC_009929 NA non-coding upstream 193043 25207618 ~ 25213978 (+)
XLOC_009948 NA non-coding downstream 329975 25830704 ~ 25831076 (+)
XLOC_009949 NA non-coding downstream 458167 25958896 ~ 25960158 (+)
XLOC_009954 NA non-coding downstream 573982 26074711 ~ 26080716 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05882855_05906234 JARID2A coding CI01000027 null 5882855 ~ 5906234 (+)