G235183


Basic Information

Item Value
gene id G235183
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9208018 ~ 9210521 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU266751
CAACTAGGATGGCTTGAGGGTGAGTAAAGCTTGGGGTAATTTTCATTTTAATGTGAACTAATCCTTTAATGCATCTTTGCTGAATAAAAGTTAATAATTAAAAAAATTTAAATAAAAACTTACAGACCCCAAACTTTTAAACAATAGTGGACATTTTAATAAATATAACTGAAAATTAGAATACAGAAACAGCAGCATTTACCTAAATATTCCACAAAAAGTTATGCAGGGACACAAATCAGTGATATTTTTTGTGATATACTACCCAACACAGGCTGAATAAACAGCTGTATCTGGCTGGTGAGGTATAAATCCACTTCAAATTCAGCTCCTGGTCACACAAGATCTCCGAACAGGATAAAATGCTGTGCGATATACAACAAAGTCTCTGTGAAAGAACCAATTGTTACTGTGGAATAAGTAAATAGATATGTGCCTGAACATTCCTCCTGAACACTCCCTATGCTGGTGTATTTTTCCTCAACACCAAGTCCCTCTCTTGCATACATAACTCTACGTGTCACTTCCTGACAGAGGTTTTTAAAGACGGCGTACAATTTTCAATAATGTTCCACAGGTCCTAAAGGAGCTCAATTACTCCAGGCCTACAGAGGCCACTGAATCAGCATTTCAAAGTGAAACTCCTTTCCACAAAGACCTTTGAATTGAAATAGAAAAGTTTCTCCTTCCCAGCCGTATGGGCTCAACTCTGATTGACCCCTCTCAATCTGTGCCTCTCTGTTGTAAAGAACAGGCATAAAATAAGGCAGAGTTAATAGAGTTTAGGACTAAGAGCCAAACCGCATTGGAATAGGAAGGAGATGGAAAGAGTCAAGGGAGGGAGAGAAACTGATTGAGCAAAGGGACGAGAAAAAGAGAGAGAGATCCCTAAGGGAGGGGGATTGGGTCCGGGCTGCCTGAGGAGATTCTCGGATCTAATTGGCCGAATGCCTTCACTCCGCGTTCCCACAATGCCTTGTGTTGCAGTGACTTTCTCTAAAGTCTCGATGGACTCCTCAAGGTTACCGTCACTCTTCGGTGTTATCGCTGCACTCTAAGCCACTGTAGCAAATCTGCTTTTAGCGTAGCGATTATGGACTACTGAGAATAGCTGAATATTCAAAATGCTTCAAACACACACATACAGGTTTTCATCAACTTTAACACTCATATATTTCACCCAGAACCACAATAAAACAGGCACAGGGTGACTCTCTGATAAAATCGGATTAGAGTAAAATATTGATGGTGAACAATAGATTTCTTCATGTATATGTGTGTTTTTTGTGTGTTTTTACGGCAGTAAAGAGGATGTAATGAAAAGCATGCCCTTGAATCCAAAAAGCCGCCGAGGTGTCTTTTCAGTTCCATTCCCATGGAGAAATCCTCTTTTTTCCTTTCCTTCCAGCATCGCCACAGCTAACCAAATAACCTCTTGTGTATATCAAAGTGGAATCAAATAAAGAAATCATCTCTACTTTCATTTTGCCCCTGTCTTTTCTTCTGTAAAGCCACAGGTATTAACCAAGTGAAGATATTTCATGATATTAAAATGGCAGCTGAAAGAAAATGTATTTTTCTCAATCGTAGCCACAATTGCATTACTGTTGTAGCGAGATATTTGATGCTGTGTTTGCATATGTAATCTGAAACAGATTGATAAGAAGCAGAGGTACACATGAACAAATAAATCAAACCCCTTGACCCAAATCTATGCTTTGATCCCATGGTGATGGGGAAAATATGCATAAATCCCTCTTCATTTCCAGAACCTCATATAGCAATTCCGACATCGCTCTGATGAGCAGACGTGGAGATTTTCAGGAAGCACCATCTATATGATGGAAATAACAGTATTAAAACATTTATGAATGCCTACAGAATGAACAAAGTCTGCATTCCCTGTGTGTTAGCAGTTTTCCATAACAATATTTAGCCAGGAGCCGTCTTCCATTCTCAAACGTGAACTTTTGGTCAGCATTATTATCAATTATGCAGTAGTATTCACCTTCTGCTGGAAATTCATTAGGAGATCAATAGAAATCACTTATGTCCAGCAGCAAAATCATTATGTATGTGCCAGAAATCCTTAAGCAGCTCAAGAGGGGGAAAATAAAAAAACATTTTCAAAGGAATATTGATTTAAAAACTGGATGGATTTCAGCCATAAGAGTGTTGCGCTCTACACTTTCAATAGATTACAGCAGTGTGGCCTCATACAGAATCCGTACATAGGGCATTATGAAAAAGCCTTGGATGTTTATTGTAAATGTAAGCAATTACTATAAGGGAGAGTACAAGTGAATCCTGTGTACTATAAAGATTACTACAGGAATTGCTTTTGGAAACAAAATGTGCTCACACTGTAGTTCACAAAGCAAAGAAAAACAACGTATAGCAATGATGGCAACTAACAACATATTTTCATTTAATAAAAGATGAATACAGTTATCTTCAAAGTGACATTAATTATATTGTATATCATTATGTTGTGTAATAGGAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU266751 True 2504 lncRNA 0.38 1 9208018 9210521

Neighbor

gene id symbol gene type direction distance location
CI01000054_09077309_09080163 NA coding downstream 127206 9076831 ~ 9080812 (-)
CI01000054_08953766_08966617 TMEM57, TMEM57A coding downstream 241401 8952134 ~ 8966617 (-)
CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding downstream 265431 8937312 ~ 8942587 (-)
CI01000054_08721571_08723333 NA coding downstream 483936 8721008 ~ 8724208 (-)
CI01000054_08710955_08718087 HDAC1, HDAC2.S, HDAC2, HDAC1.S coding downstream 489931 8710787 ~ 8718087 (-)
CI01000054_09218869_09223868 NA coding upstream 8111 9218632 ~ 9224119 (-)
CI01000054_09453616_09482480 LPCAT1 coding upstream 241588 9452109 ~ 9482723 (-)
CI01000054_09483912_09484282 MRPL36 coding upstream 273291 9483147 ~ 9484282 (-)
CI01000054_09488559_09488870 NA coding upstream 277755 9488276 ~ 9488870 (-)
CI01000054_09495785_09497239 IRX4B, IRX4 coding upstream 284929 9495450 ~ 9497682 (-)
G235204 NA non-coding downstream 7867 9199866 ~ 9200151 (-)
G235202 NA non-coding downstream 10140 9197480 ~ 9197878 (-)
G235187 NA non-coding downstream 50282 9157481 ~ 9157736 (-)
G235150 NA non-coding downstream 123040 9084762 ~ 9084978 (-)
G235135 NA non-coding downstream 140111 9067578 ~ 9067907 (-)
G235210 NA non-coding upstream 26886 9237407 ~ 9237874 (-)
G235217 NA non-coding upstream 38116 9248637 ~ 9248863 (-)
G235218 NA non-coding upstream 38371 9248892 ~ 9249118 (-)
G235219 NA non-coding upstream 38663 9249184 ~ 9249419 (-)
CI01000054_07165957_07169539 HEYL other downstream 2036345 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 2554005 6628082 ~ 6642160 (-)
G232274 NA other downstream 3998778 5206199 ~ 5209240 (-)
CI01000054_04671351_04681181 PEF1 other downstream 4535785 4670151 ~ 4681361 (-)
G231645 NA other downstream 5225195 3981847 ~ 3982823 (-)
G235216 NA other upstream 37518 9248039 ~ 9248538 (-)
CI01000054_09864693_09866871 PPP1R11 other upstream 652800 9863321 ~ 9867212 (-)
CI01000054_10817235_10819181 TAC1 other upstream 1593350 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1660583 10871104 ~ 10881495 (-)

Expression


Co-expression Network