Gene
RNA
| Item | Value |
|---|---|
| gene id | G234750 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 9211185 ~ 9213332 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU266298 | True | 2120 | lncRNA | 0.38 | 2 | 9211185 | 9213332 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_09151300_09164780 | NA | coding | upstream | 46247 | 9150785 ~ 9164938 (+) |
| CI01000054_08975450_08984634 | E2F3 | coding | upstream | 226010 | 8975359 ~ 8985175 (+) |
| CI01000054_08969979_08973590 | NA | coding | upstream | 237519 | 8969979 ~ 8973666 (+) |
| CI01000054_08908112_08917294 | FNDC5B, FNDC5, FNDC5A | coding | upstream | 293590 | 8908112 ~ 8917595 (+) |
| CI01000054_08771624_08790335 | NA | coding | upstream | 420263 | 8771561 ~ 8790922 (+) |
| CI01000054_09232327_09233391 | SOX4A, SOX4 | coding | downstream | 18667 | 9231999 ~ 9234242 (+) |
| CI01000054_09437674_09440443 | NA | coding | downstream | 223011 | 9436343 ~ 9441827 (+) |
| CI01000054_09485610_09487896 | NDUFS6 | coding | downstream | 271909 | 9485241 ~ 9487967 (+) |
| CI01000054_09556901_09561363 | IRX1, IRX1B | coding | downstream | 342945 | 9556277 ~ 9561580 (+) |
| CI01000054_09652700_09656625 | UBE2QL1 | coding | downstream | 439240 | 9652572 ~ 9656747 (+) |
| G234749 | NA | non-coding | upstream | 245 | 9210694 ~ 9210940 (+) |
| G234748 | NA | non-coding | upstream | 667 | 9209071 ~ 9210518 (+) |
| G234745 | NA | non-coding | upstream | 7220 | 9203717 ~ 9203965 (+) |
| G234725 | NA | non-coding | upstream | 39209 | 9171740 ~ 9171976 (+) |
| G234723 | NA | non-coding | upstream | 41363 | 9169613 ~ 9169822 (+) |
| G234756 | NA | non-coding | downstream | 11922 | 9225254 ~ 9225475 (+) |
| G234805 | NA | non-coding | downstream | 127409 | 9340741 ~ 9340951 (+) |
| G234833 | NA | non-coding | downstream | 186743 | 9400075 ~ 9401002 (+) |
| G234853 | NA | non-coding | downstream | 218459 | 9431791 ~ 9432011 (+) |
| G234864 | NA | non-coding | downstream | 238765 | 9452097 ~ 9452845 (+) |
| CI01000054_08325126_08329621 | HPCAL4, VSNL1, VSNL1.S | other | upstream | 881597 | 8325126 ~ 8329716 (+) |
| G233306 | NA | other | upstream | 906236 | 8304599 ~ 8304949 (+) |
| G233024 | NA | other | upstream | 1601292 | 7567523 ~ 7609893 (+) |
| G232870 | NA | other | upstream | 2322682 | 6887912 ~ 6888503 (+) |
| G232659 | NA | other | upstream | 2835291 | 6374850 ~ 6375894 (+) |
| G235560 | NA | other | downstream | 1174804 | 10388136 ~ 10392378 (+) |
| CI01000054_11564820_11568338 | S100V2 | other | downstream | 2351644 | 11564820 ~ 11568999 (+) |
| CI01000054_11633235_11635069 | PRF1.8 | other | downstream | 2419644 | 11632959 ~ 11635103 (+) |
| CI01000054_11648262_11648786 | NA | other | downstream | 2434647 | 11647959 ~ 11649495 (+) |
| G236874 | NA | other | downstream | 2600356 | 11813688 ~ 11816475 (+) |
