Gene
RNA
| Item | Value |
|---|---|
| gene id | G235337 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 9519146 ~ 9519397 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU266921 | True | 252 | lncRNA | 0.40 | 1 | 9519146 | 9519397 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_09485610_09487896 | NDUFS6 | coding | upstream | 31179 | 9485241 ~ 9487967 (+) |
| CI01000054_09437674_09440443 | NA | coding | upstream | 77319 | 9436343 ~ 9441827 (+) |
| CI01000054_09232327_09233391 | SOX4A, SOX4 | coding | upstream | 284904 | 9231999 ~ 9234242 (+) |
| CI01000054_09151300_09164780 | NA | coding | upstream | 354208 | 9150785 ~ 9164938 (+) |
| CI01000054_08975450_08984634 | E2F3 | coding | upstream | 533971 | 8975359 ~ 8985175 (+) |
| CI01000054_09556901_09561363 | IRX1, IRX1B | coding | downstream | 36880 | 9556277 ~ 9561580 (+) |
| CI01000054_09652700_09656625 | UBE2QL1 | coding | downstream | 133175 | 9652572 ~ 9656747 (+) |
| CI01000054_09706828_09710100 | SRD5A1 | coding | downstream | 187431 | 9706828 ~ 9710525 (+) |
| CI01000054_09713935_09728946 | PAPD7 | coding | downstream | 194538 | 9713935 ~ 9729457 (+) |
| CI01000054_09737668_09759688 | NA | coding | downstream | 216337 | 9735734 ~ 9759887 (+) |
| G234864 | NA | non-coding | upstream | 66301 | 9452097 ~ 9452845 (+) |
| G234853 | NA | non-coding | upstream | 87135 | 9431791 ~ 9432011 (+) |
| G234833 | NA | non-coding | upstream | 118144 | 9400075 ~ 9401002 (+) |
| G234805 | NA | non-coding | upstream | 178195 | 9340741 ~ 9340951 (+) |
| G235382 | NA | non-coding | downstream | 57203 | 9576600 ~ 9576876 (+) |
| G235411 | NA | non-coding | downstream | 150479 | 9669876 ~ 9671024 (+) |
| G235448 | NA | non-coding | downstream | 314227 | 9833624 ~ 9835331 (+) |
| G235433 | NA | non-coding | downstream | 329926 | 9849323 ~ 9852693 (+) |
| G235439 | NA | non-coding | downstream | 390235 | 9909632 ~ 9914300 (+) |
| CI01000054_08325126_08329621 | HPCAL4, VSNL1, VSNL1.S | other | upstream | 1189558 | 8325126 ~ 8329716 (+) |
| G233306 | NA | other | upstream | 1214197 | 8304599 ~ 8304949 (+) |
| G233024 | NA | other | upstream | 1909253 | 7567523 ~ 7609893 (+) |
| G232870 | NA | other | upstream | 2630643 | 6887912 ~ 6888503 (+) |
| G232659 | NA | other | upstream | 3143252 | 6374850 ~ 6375894 (+) |
| G235560 | NA | other | downstream | 868739 | 10388136 ~ 10392378 (+) |
| CI01000054_11564820_11568338 | S100V2 | other | downstream | 2045579 | 11564820 ~ 11568999 (+) |
| CI01000054_11633235_11635069 | PRF1.8 | other | downstream | 2113579 | 11632959 ~ 11635103 (+) |
| CI01000054_11648262_11648786 | NA | other | downstream | 2128582 | 11647959 ~ 11649495 (+) |
| G236874 | NA | other | downstream | 2294291 | 11813688 ~ 11816475 (+) |
