G235706


Basic Information

Item Value
gene id G235706
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9821113 ~ 9829169 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267340
AGCAGCTTTGGCATGTTGGGTGAAATATTTGTTTATGCTGTAAACAGACAAACAAACAGCCAAATTTAGATAAAACTACCTCTCTGGGAGCACCAAACTGGATGTAAGTCTCAGAAATCATTTTTGCCCGCCTTTGCAGGCTGAATTTGTTGGATGACTGTCTGTACTGCTCACAGGCTGAGTAGAACTGCAGGTTTTCCTCACTGAATTCAGATCGCAGGAACGCTTCAAAGACTGTGACTCCCACTAAAGGATAGGTGAGATGAGAGAAGGAGAAAGAACCTTAACGAACATTAAAAAAAAAACAGCTATTTCTGTTTACAAATGGGAGGGGTTGAGGCTCAGATGATACGTTCACATGCATGTTCTGCCATACACCCACACACGTTGCATAGCAGTTGCCACAAAAATGAGAGAAGAAAAAACCTTTGGACGTCAATATCTTGAGGGTTTATCTCACACCACATACCTTCCTTCTCTCACATTTTCTCAAAACCCTTGAACTGCGGGGTTGCGACACTCTTGAGTGAGAAAATAGAAGTCGAACGGGGGCAGGGCTCTGGAGTTACAACATACTGGTGTTCCAACATTTCAACCAGTCCAGACACCAAAACACATCCACCACACAATTCAAAAAAAGCTTTAAATGGTGTATAATTTGACCCATAAATAAATATGGCACAAAAAAATATTGAACTTAAAATATGGTTTGGATTTAAAAAGATAAGTCAAGTTTTAATCAAGTTTTAGTTACTGAAAATTCCAGAAAATATTATATGGTTTGAATGGTTGAGCCAAATGCAGTCAACATTATATTTTGAAATAGAATGCAATTTTTATTTCATCATGCTGTAGAAGCAGTCCAAAGGATGTTACATATTTGGTGTCACAATTTTACGAAATGTTGTTTTTTGTAATGTGGGAACATCACATGCGATAAGGTTGATTTATTGAATATCAATTCAACAGATTAAAATATTATGGTTTTGGTAATTAAAATAAGTTTATAATAATCTTCTACAATAAACTGAATATCAATTAAAGGGTTAATTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCCTCAAGCCATCCTAGGTGTACTGTATATGACTTTCTTCTTTCAGATGAACACAATCGGAGATATATTTAAAAATATCCTTAGTCCTCCACGGTTTATAATGGTTGTGAATGGCTGGTCAAATTTTGAAGACAAAAAAATGCATCCATACGACTCCAAGGGGTTAATAAAGGCCTTCTGAAGCGAATTGAAGCGTTTGTGTAAAACAAATATCCTTATTTAAAACTTTATAAATTCAAATAACTAGCTTCCGTACGCATACTGCGCTCTAAACCTTGGAGGACTTTAAGAAAATTTTTAAATATATCTCCGATTGTGTTCGTCTGAAAGAAGATAATTATATACACCTAGGGTGTATCCCATGATTTACTCACTTGAGGGTGAGTAAATCATGGGATAATTTTAATTTTTGGGTGAACTATCCCTTTAAACAGTATGTTATTTATGGAAAGCACTATTACGTATGTATGGAGAGAATTAGTCTCCAAATTAGCAATAGCAGTGACACAGAATCGACTGAATTCCTCACTCTATGTTATACTTTGTCTCAACTGTAACTGCAAAATGTGCTATGTGTGTATCAGTGTATTATTAGATTTTATGAGGTTTGTTACACTAATAAATTGCTTCCAGGGTTATAACAGAAATACAAAAGAGGGCAATACCAACAAAGAGGCTGTTAATCATTAAACCCTATTAATTTTAACAATAAAACAAATCACTCGAAAGATGACATCTGGTGTCAAGACAAGCATAACCATAACCATTATTAGTCCACTGTTTATACATCACAATTTCCATTTAAGGTCAGCTATAATTATCAGTAGTGCTTTCTAAGGAAACTATTATCATTGCCCCTAACCATATACAGCAAGTACTAAACTTCAACACTGTGCTAAGAATATGAATCATACTTCGAATTATGTGGTTTGCTAAGAAGAGGTGTGCTACTACTTTTCTAGGAGATCTGACTAACAATGTTTACATGGTGGACAATGAACAAGGCAAAACATCCTTTAAACTTTCACTCAAGGGACTTGAATCACATCAAGAGTCCTTGTGACTGGTTTTATTTTTCTTTTACCAAACCCTGCCTTCATGCTACAGACTTTTCATAAGCAAGCACCACTCACATTCCCTTCTGAAAATGTAAAAATCTAGGTGGTTTAATCTGTGAAATTGTACGTCAGCGCTCTCAACCTCTTGGGGAAAAGAACATTATTCCGTTATCTCCTTTCTTCATATCGCTTTATGTTGTTAGGGAATTCTCCGGAAACTCATGCCTGAAGCTACACATGAAAGTGGTTCCTCAATGTTAAGAGGAAGCTGTTTCAAGGGTGTTTCAATGATGTAATAGATGGGTTTCACTACAGAACCACCAAAATTGTACTAAGTACACACCAAGCTAACCTACACTACCGTTCAAAAGTTGCATTTATTTGATCAAAAATACAGTATAACATGTGATGGCAAAGCAGCCATTACTCCAGGCTCTTCAGAATTCTTTGGTCAATATAAAGTAAAAAAAACAAACAAACAAAAAAACAAAACGTGACATCTGAACACTTAAAAACGGTTCACTTATGTCATAGAAATATACCTTAGGATAGATCAGTTTCTTGTCTTTTCATGACAGGTCCATGTATAGGTCTTATATCCGAAAGATTCGGAATCGGTTCGTCTTTCAACTGGAGTCCGTATAGACAGAAACACACACAACTGGATCCGAAGCGAGTCAGCTGAACGGAGTGATTCTTCGTGTAACTGTTAGCCGTCAAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267340 True 2869 lncRNA 0.36 2 9821113 9829169

Neighbor

gene id symbol gene type direction distance location
CI01000054_09812111_09813425 NA coding downstream 7612 9811858 ~ 9813501 (-)
CI01000054_09686420_09705911 NSUN2.S, NSUN2 coding downstream 115202 9686047 ~ 9705911 (-)
CI01000054_09650064_09651286 MED10, MED10.S coding downstream 169827 9649807 ~ 9651286 (-)
CI01000054_09531778_09544007 NA coding downstream 276603 9531510 ~ 9544510 (-)
CI01000054_09495785_09497239 IRX4B, IRX4 coding downstream 323431 9495450 ~ 9497682 (-)
CI01000054_09831831_09832148 NA coding upstream 2589 9831758 ~ 9832148 (-)
CI01000054_09841097_09848347 ATAT1 coding upstream 11845 9841014 ~ 9848892 (-)
CI01000054_09864693_09866871 PPP1R11 coding upstream 35114 9863321 ~ 9867212 (-)
CI01000054_09914091_09916621 DDX39B coding upstream 84201 9913370 ~ 9916621 (-)
CI01000054_10082299_10083956 NA coding upstream 252744 10081913 ~ 10084102 (-)
G235737 NA non-coding downstream 25118 9793671 ~ 9795995 (-)
G235651 NA non-coding downstream 123854 9696958 ~ 9697259 (-)
G235649 NA non-coding downstream 143493 9677283 ~ 9677620 (-)
G235648 NA non-coding downstream 144318 9676474 ~ 9676795 (-)
G235647 NA non-coding downstream 145296 9675591 ~ 9675817 (-)
G235750 NA non-coding upstream 24092 9853261 ~ 9853524 (-)
G235761 NA non-coding upstream 62611 9891780 ~ 9892046 (-)
G235764 NA non-coding upstream 99983 9929152 ~ 9936746 (-)
G235772 NA non-coding upstream 116955 9946124 ~ 9946394 (-)
G235790 NA non-coding upstream 146611 9975780 ~ 9976208 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 335726 9483147 ~ 9484282 (-)
G235216 NA other downstream 572575 9248039 ~ 9248538 (-)
CI01000054_07165957_07169539 HEYL other downstream 2649440 7165435 ~ 7169539 (-)
CI01000054_06629482_06641861 TRIQK other downstream 3167100 6628082 ~ 6642160 (-)
G232274 NA other downstream 4611873 5206199 ~ 5209240 (-)
CI01000054_10817235_10819181 TAC1 other upstream 974702 10816015 ~ 10819362 (-)
CI01000054_10872970_10881017 SDHAF3 other upstream 1041935 10871104 ~ 10881495 (-)
G236748 NA other upstream 1456025 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 1949721 11778890 ~ 11781880 (-)

Expression


Co-expression Network