G235433


Basic Information

Item Value
gene id G235433
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 9849323 ~ 9852693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267030
CTTTAAATTACCTTCCCTGGACGCAGCGCGATCCCGTTCTGCGGATGCTGCAGTGTTTGAGGGAACCAAATTGCAAAGAAATGGGCCGAAGTGGCAAGAACGTCCCTGCTGTTGGATGGGAGAAGAAAAAAATGTTGCCAGGTAGCTGATGTTAACCGATTACTACCAATGGGTTGGATGAGCGAATAAGATGTTGCCAGGAAGCTGATGTTAACCGTTTACAACCAATGGGTTGGATGGGAGAAACCGATGCTGCCAGGTAGCTGACGTCAACCGTTTACAACCAATGGGTTGGATGGGAGAAATGGATGCTGCCAGGTAGCTGATGTCAACAGTTACTCAAACAATGGGTTGGATGGGAGAAGAAAAAAATGTTGCCAGGTAGCTGATGTCAACCGTTTACAACCAGTGGGTTGGATTCCAACAGAATGGTTGATGGCAACAGTTGACAACCAGATTTCAGCGAAAGATTTGCAGCCAACATAGACGTTAAAATGTCTTGAGCCCATGATTCTACGTAAAGGTTGATGTGATGCCAGAATTATGTGCCAGAGATGGGTATATGCATGCAAATGTGCAGACCCGTAAGTCGAAGTCGTGTCAGAAGAGGAGTTGTGAACGGTTTGCAGCATGATGGTGAACTGTCAAGCTACTTTGTAGTATTGTGTATCAATTTAAACAGTTGTTTCAGTGCTGTTGTATTTCCAAGGACAGTTTGAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU267030 True 721 lncRNA 0.45 11 9849323 9852693

Neighbor

gene id symbol gene type direction distance location
CI01000054_09821936_09830034 NA coding upstream 18247 9821411 ~ 9831076 (+)
CI01000054_09815882_09817184 NA coding upstream 31762 9815882 ~ 9817561 (+)
CI01000054_09761729_09811401 ADCY2A, ADCY2, ADCY2B coding upstream 37690 9761290 ~ 9811633 (+)
CI01000054_09737668_09759688 NA coding upstream 89436 9735734 ~ 9759887 (+)
CI01000054_09713935_09728946 PAPD7 coding upstream 119866 9713935 ~ 9729457 (+)
CI01000054_09854830_09855777 NA coding downstream 1635 9854328 ~ 9855897 (+)
CI01000054_09867474_09888100 VARS2 coding downstream 14781 9867474 ~ 9888402 (+)
CI01000054_09900501_09903235 MGAT1B coding downstream 47633 9900326 ~ 9904507 (+)
CI01000054_09917664_09918469 NA coding downstream 64971 9917664 ~ 9918866 (+)
CI01000054_09919245_09928118 GTF2H4 coding downstream 66552 9919245 ~ 9928400 (+)
G235448 NA non-coding upstream 13992 9833624 ~ 9835331 (+)
G235411 NA non-coding upstream 178299 9669876 ~ 9671024 (+)
G235382 NA non-coding upstream 272447 9576600 ~ 9576876 (+)
G235337 NA non-coding upstream 329926 9519146 ~ 9519397 (+)
CI01000054_09485610_09487896 NDUFS6 non-coding upstream 361365 9485241 ~ 9487967 (+)
G235439 NA non-coding downstream 56939 9909632 ~ 9914300 (+)
G235440 NA non-coding downstream 230940 10083633 ~ 10087802 (+)
G235501 NA non-coding downstream 336739 10189432 ~ 10189653 (+)
G235502 NA non-coding downstream 336998 10189691 ~ 10189938 (+)
G235508 NA non-coding downstream 384856 10237549 ~ 10237900 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1519735 8325126 ~ 8329716 (+)
G233306 NA other upstream 1544374 8304599 ~ 8304949 (+)
G233024 NA other upstream 2239430 7567523 ~ 7609893 (+)
G232870 NA other upstream 2960820 6887912 ~ 6888503 (+)
G232659 NA other upstream 3473429 6374850 ~ 6375894 (+)
G235560 NA other downstream 535443 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1712283 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1780283 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1795286 11647959 ~ 11649495 (+)
G236874 NA other downstream 1960995 11813688 ~ 11816475 (+)

Expression


Co-expression Network