G235440


Basic Information

Item Value
gene id G235440
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10083633 ~ 10087802 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267037
AAAGAGGATCTGAAACTGAGGGTCTGAACTTACCAGTTGCACTTTCCTGATTACTCTGAGACTATAGAGAGAACAAGAGACACATGATTACACATCTAATAATACAATTATGTTAATGAGATGTGTGCGGATCAGGATTCTGACCTTGTTGAGCGTGAAGCAGACAGCAGCGGCAGCACACAGGGCCACAGCCAGAAGAGCCCCACACACCCGCCATACGCCTGACTTTGAAGTGCCAGCCTTCCTCCTCGGCACCATCACCCTCGGCAAGGGCAGCGTTACTTTTTCAAGATCCAACACTACCTGACTGGCATGCTCCATCATTACTGTGTGTTTGTCCTCTGAAAGCTTAAGTTAAACTATATGTAAAAATGCAGATGCTGTCAAAATGCTTTTTAAAAGGTTCTGTAAAGTGTCCTCAGTGCAGTTTATCACTTCAGTGCTTTGCTTGGTCGGTCTGTCACTGTTGTGTTCAGAATATGCTGGTTCTTCATTCTTTTTAAAGCTCAGAGACTGCAAGACCAGGGGAAACTCCAGTGATCCATCCTAGGTGTATATGACTTTCTTCTTTCTGATGAACACAATCGGAGAAACATTAATAAATATCCTGACGCATCCAAGCTTTATAATGGCAGAAAGCGTTACCAAACGAGTATGAGCTGAAGAAAGTTGCCCTGTCCAAATATCCACACTTGCAGTCTTTGCGCTTGACCACTTGTCTACTTACATGACGTATTTCCTGTATTTGGCTCAAGCGTTTAAGTGGGCGTGAAGACTGCAAGTGTGTGTAGAACTTTTGATTACCCAACGGGACACACTTATAGTCTTGCAAAAAATGCAAGCGTTTACAGAGCTTTTTGTTTTGTTTTGGGTTTTTTTAATTATTATTTTCAGTACTTTGCATTTTAAAATACACTTCTAAATGTCTGTTCAGTGGTCACTATGTAACTAACAGAAGACACAATTTTAAAATTGTGGTGCTTCTTTAAGTGATAAAAAGCAGTTGCAAATGATGTACAAAATACACATAGCCTACTCATCTTTGCATCAATAAAATGTGCAACACCTTATATTTTACTACCAAATTATATGTAATATATAATTAATTTAACTTACAGTCTTATGTTTTCCTTGACATCTCGCGACTTCGGGGCATGCGACTTCCCGAACATAATGCATGGTGGGATACGCTTAGTGTGGGTTTAGTTTGCATTAAGGACACTGCACTTGGGCATTTTTAAGACATGGGACAGTCTTGCGCACTTACTTCCTGTCGCGTGCACGCGCTCTCAAGTGGCCAAGACCGCAAGTGTGGGTATTTGGACAGGGCAAGTGTGTCCATCCACATCCATCCATCATAAACATATTCCACACGGCTCCGGGGGTGGGTGGATGGATGGGGTGGAGTTAATGAAGGCCTTCTGAAACGAAACAATGTGTTTGTGTAAAAAAAAAAAAAAAAAAAATATATATATATATATATATAATATTTATATTTATAATATATTTAACAAGTTATGACACACACCACTTGAACCTTCTATAAAATAATTCATAAAGTTCGAAAGGTTGAAGCGAATTACAAGGATGTTTGCATTGGGCTTTGTTTAGGCTACATTAATAGACTCGCCCTGCGTTCCATTCGGAAGGGCTCCGGAGTGAGAGCTTCGAAGGGATGAAGGGTGTAGGGGTCAAAAAAAATCTTTTTTTGGAACGCACTTCTGCGTCATCTTAACGAGACAATCAAGGAGGAGTAGATTGTGCAAGCTGCGCCTTTTGTTTAACGTTAGTTTATTTATTTATTTTTTGTTTATCGCACCATATTGTATATTGTGTCTATGTATTTGAAACATTTGAATGGACTGATAAACCAAATCTAACTCGTATAAATATTACAGTAGTATAGGAAAATACTGTACATACATTTATAGGTAAAATCGAACTCCGAGCTTCCTGTATCCATTCTGTGACGTCAAACAACTTCCCTGTGCGAAGGATCATGGGGGCCCGAAGTGCCCATCAGTTGTACACTTCGAAATACTTCATTCCGAAGGGCCCTTTAAAGTGGCCAGTTTTGAGCACATTCGGTTTGGAACGACCCTGCAGGCCATGATTGTTTTCACTCCGAAGTGCCCTTCGGAGGGCGATATATCCCGTTTGGAACACACCGTCAGCCGAATGCGCGGGCACTCTTCTTCGTGAGCATTTGAGCATGCAGTTAAAAAAATTGCCTAGATCGCCATCTGCTGTTGAAAACTAAAGCTCAGAATCGATTTGCGATGGATTTGGAAAATATCAGAAACAATCCACGAATCGCGATGCATCAATAGTATTGTCCAGATATTGTATATTATAGGGAGATAATAGCGTCTGTATCTCTTACCATCTCTTACTATCCCATGAGGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267037 True 2409 lncRNA 0.41 2 10083633 10087802

Neighbor

gene id symbol gene type direction distance location
CI01000054_09988960_10071518 GABBR1B, GABBR1, GABBR1A coding upstream 11751 9988801 ~ 10071882 (+)
CI01000054_09929564_09940371 SH3BP5LB coding upstream 142456 9929564 ~ 9941177 (+)
CI01000054_09919245_09928118 GTF2H4 coding upstream 155233 9919245 ~ 9928400 (+)
CI01000054_09917664_09918469 NA coding upstream 164767 9917664 ~ 9918866 (+)
CI01000054_09900501_09903235 MGAT1B coding upstream 179126 9900326 ~ 9904507 (+)
CI01000054_10096838_10110282 NA coding downstream 9036 10096838 ~ 10111338 (+)
CI01000054_10114035_10120718 ZBTB12.2 coding downstream 25928 10113730 ~ 10121787 (+)
CI01000054_10129211_10147186 SKIV2L coding downstream 41409 10129211 ~ 10147422 (+)
CI01000054_10148649_10153790 PRRT1 coding downstream 60715 10148517 ~ 10154688 (+)
CI01000054_10172867_10177625 NEU1 coding downstream 85065 10172867 ~ 10178884 (+)
G235439 NA non-coding upstream 169333 9909632 ~ 9914300 (+)
G235433 NA non-coding upstream 230940 9849323 ~ 9852693 (+)
G235448 NA non-coding upstream 248302 9833624 ~ 9835331 (+)
G235411 NA non-coding upstream 412609 9669876 ~ 9671024 (+)
G235382 NA non-coding upstream 506757 9576600 ~ 9576876 (+)
G235501 NA non-coding downstream 101630 10189432 ~ 10189653 (+)
G235502 NA non-coding downstream 101889 10189691 ~ 10189938 (+)
G235508 NA non-coding downstream 149747 10237549 ~ 10237900 (+)
G235522 NA non-coding downstream 196137 10283939 ~ 10286691 (+)
G235557 NA non-coding downstream 292912 10380714 ~ 10380915 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1754045 8325126 ~ 8329716 (+)
G233306 NA other upstream 1778684 8304599 ~ 8304949 (+)
G233024 NA other upstream 2473740 7567523 ~ 7609893 (+)
G232870 NA other upstream 3195130 6887912 ~ 6888503 (+)
G232659 NA other upstream 3707739 6374850 ~ 6375894 (+)
G235560 NA other downstream 300334 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1477174 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1545174 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1560177 11647959 ~ 11649495 (+)
G236874 NA other downstream 1725886 11813688 ~ 11816475 (+)

Expression


Co-expression Network