G235501


Basic Information

Item Value
gene id G235501
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10189432 ~ 10189653 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267101
GGAAACTCCCATAATTTGTATGGCCCAAACCTTGTTATGAATAATCACAACAATATATTATTTCAAGACTGTCCAGTTGCCAGATTTTGTATAAAACGCATTGTACTCGCACAATCGCATCATACAAATTTCAACCCATTTGTGACTTCAACCTGGCATCCTACAACCAAGTTGCGCTTTTGATATCTGCGCAGGTAGTAGACGTGGGAAGTTGAATCAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267101 True 222 lncRNA 0.40 1 10189432 10189653

Neighbor

gene id symbol gene type direction distance location
CI01000054_10180219_10184702 NEU1 coding upstream 4691 10180150 ~ 10184741 (+)
CI01000054_10172867_10177625 NEU1 coding upstream 10548 10172867 ~ 10178884 (+)
CI01000054_10148649_10153790 PRRT1 coding upstream 34744 10148517 ~ 10154688 (+)
CI01000054_10129211_10147186 SKIV2L coding upstream 42010 10129211 ~ 10147422 (+)
CI01000054_10114035_10120718 ZBTB12.2 coding upstream 67645 10113730 ~ 10121787 (+)
CI01000054_10199933_10212166 PRRC2A coding downstream 10280 10199933 ~ 10212510 (+)
CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding downstream 26245 10215898 ~ 10219934 (+)
CI01000054_10246428_10247072 NA coding downstream 56775 10246428 ~ 10247123 (+)
CI01000054_10420267_10420899 NA coding downstream 230503 10420156 ~ 10422089 (+)
CI01000054_10467566_10471168 NA coding downstream 277913 10467566 ~ 10471477 (+)
G235440 NA non-coding upstream 101630 10083633 ~ 10087802 (+)
G235439 NA non-coding upstream 275132 9909632 ~ 9914300 (+)
G235433 NA non-coding upstream 336739 9849323 ~ 9852693 (+)
G235448 NA non-coding upstream 354101 9833624 ~ 9835331 (+)
G235411 NA non-coding upstream 518408 9669876 ~ 9671024 (+)
G235502 NA non-coding downstream 38 10189691 ~ 10189938 (+)
G235508 NA non-coding downstream 47896 10237549 ~ 10237900 (+)
G235522 NA non-coding downstream 94286 10283939 ~ 10286691 (+)
G235557 NA non-coding downstream 191061 10380714 ~ 10380915 (+)
G235562 NA non-coding downstream 206691 10396344 ~ 10412895 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1859844 8325126 ~ 8329716 (+)
G233306 NA other upstream 1884483 8304599 ~ 8304949 (+)
G233024 NA other upstream 2579539 7567523 ~ 7609893 (+)
G232870 NA other upstream 3300929 6887912 ~ 6888503 (+)
G232659 NA other upstream 3813538 6374850 ~ 6375894 (+)
G235560 NA other downstream 198483 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1375323 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1443323 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1458326 11647959 ~ 11649495 (+)
G236874 NA other downstream 1624035 11813688 ~ 11816475 (+)

Expression


Co-expression Network