G235508


Basic Information

Item Value
gene id G235508
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10237549 ~ 10237900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267108
CTGGATCTGCTGCTGTAGCTGTAGTTTCTGAGCTGCATTCAGGGTCATGGACGTTATGGGGCTGGAGGGGCGTTGAGGGCAGGCTGGAGGTATAGACACTCCTTTACTCTTCAACAGAGCCTTCCGTTTCCTCACAGCTGCCAGCTGCTCCCGTACTGTGCGATACCGCTGCTTCAAGACATCTGCTAACGGGTCCTCATACTGAATATTTTCCAGAATGCCAGGTGGCTCCTGCAGGGGACTGTCCTCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267108 True 253 lncRNA 0.55 2 10237549 10237900

Neighbor

gene id symbol gene type direction distance location
CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding upstream 17615 10215898 ~ 10219934 (+)
CI01000054_10199933_10212166 PRRC2A coding upstream 25039 10199933 ~ 10212510 (+)
CI01000054_10180219_10184702 NEU1 coding upstream 52808 10180150 ~ 10184741 (+)
CI01000054_10172867_10177625 NEU1 coding upstream 58665 10172867 ~ 10178884 (+)
CI01000054_10148649_10153790 PRRT1 coding upstream 82861 10148517 ~ 10154688 (+)
CI01000054_10246428_10247072 NA coding downstream 8528 10246428 ~ 10247123 (+)
CI01000054_10420267_10420899 NA coding downstream 182256 10420156 ~ 10422089 (+)
CI01000054_10467566_10471168 NA coding downstream 229666 10467566 ~ 10471477 (+)
CI01000054_10508500_10513655 NA coding downstream 270600 10508500 ~ 10513857 (+)
CI01000054_10601018_10615939 NA coding downstream 363074 10600974 ~ 10615954 (+)
G235502 NA non-coding upstream 47611 10189691 ~ 10189938 (+)
G235501 NA non-coding upstream 47896 10189432 ~ 10189653 (+)
G235440 NA non-coding upstream 149747 10083633 ~ 10087802 (+)
G235439 NA non-coding upstream 323249 9909632 ~ 9914300 (+)
G235433 NA non-coding upstream 384856 9849323 ~ 9852693 (+)
G235522 NA non-coding downstream 46039 10283939 ~ 10286691 (+)
G235557 NA non-coding downstream 142814 10380714 ~ 10380915 (+)
G235562 NA non-coding downstream 158444 10396344 ~ 10412895 (+)
G235899 NA non-coding downstream 177550 10415450 ~ 10415717 (+)
G235902 NA non-coding downstream 180901 10418801 ~ 10419141 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 1907961 8325126 ~ 8329716 (+)
G233306 NA other upstream 1932600 8304599 ~ 8304949 (+)
G233024 NA other upstream 2627656 7567523 ~ 7609893 (+)
G232870 NA other upstream 3349046 6887912 ~ 6888503 (+)
G232659 NA other upstream 3861655 6374850 ~ 6375894 (+)
G235560 NA other downstream 150236 10388136 ~ 10392378 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1327076 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1395076 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1410079 11647959 ~ 11649495 (+)
G236874 NA other downstream 1575788 11813688 ~ 11816475 (+)

Expression


Co-expression Network