G235560


Basic Information

Item Value
gene id G235560
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10388136 ~ 10392378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267167
ACCTCTCGTTCAAAGAAATATAAAAGACTGAGAGTTACTTCTATATTTACAGAGCATAGTTTTTGCTTCAAACAAACAGAAACAAATCCTACTTGTACAAATTGAAAAAATATCTCCTGCTGTGACTGTTCGATATTGTGTCAGCAGTAAAGAAAATAGTCCTCTTCATCGCTCAATAATAGTCTGTGCAAAGAAAGAATGCATATCAAACACACCGTGTTGCTGCTACATTAAGGCAAACCCCTAGGAACAATACACTTAGGAAACTCCTTGGTAAAGTGACAGTGTCAATTAGATAATTTCTCGTTTTTTTTTTTTTTTTTCCCCAAAAAAACCTTTCCTATAGATAACTTTCCCCACATCTTCCATGAAAGCAAAGCATAAACAGGTCAAAATCTCTTAAAATGGTTAGCAGATCATTTAGTACCCTTTAAATTCAAAGCTAATCACTGGTTGACCATAGCTGAAATAAAAGCTTTAGACAACATAAACCTCTGAGGAGCCTTTACGGGCCAGGTTTGGAGCGTTGGTTATGGAAGCTGTTAATCTACATATGAATGGAGGATTAGTAGTTTGACAACTTCCTCTCTACTCAAAGTGCTGCGAGGGTTTGTGCCCCTCACCATAAATACCTCTTCATTGGCATGGAAACTATGAAGACAAACCTAAAACAAACTCAAATCCACTGCAAAAGAAACATGCTTAAAGTGGACATTGCATGTTAAAAGCATAACATAAAATTCAATTAAATTAAGAAAACAAAAGCTACTCCCTAAACAATACAATTCCTCATGGCATACAGATTTGTGCAGGTTATGAGGCAAAAATATCAGCTTGAACGTTCTGCATGCTTTTGCGTATGGAAAAGTAAAAAAAAAGAAAAAAAAACACTTTCAAAAGTACATTTATCAGATCAACTGATACAATTAATTTAAGAGACAAACATTCACAAACATCAAAAGATCACAGTCTCCTCAATGGTTTCAAAAACAACATTTCTATGAGAAGCAAACCAACCGCCGTGGCGCTCGGACTCTTAGTCGGCCACCGCGTCAACTGAAATAAAAGTCCTGTGGAAAAGTGGTAGGCAAGCTTAGTTTTGGTAGATCTTCTCACTGGTGGAGTAGTCATTGGTAGTGCAGGTGTGCGCGGCCACCCCTCGGTGGATGGGTTCGGGGCTGTTGCCGCTGCTGCCGATGGTCAGGTTGAGCAGACTGGTGCACGTGGGCAAGTAGACGTGCTGGACATGTTCCACCTCTGACCGACACACAGGGCATGACTGCAGCTGTGCAGCACAGTTCTGGCAGCACACCATGTGACCACAGGGGCAGAAAGCGGCGTCGATCTCTTCCTCACAGCACAGCATGCACAGCAGCGCCTCCCGCAGTTTCTGCAGCTTCTCCTGTAGCAAGCGGCTCTGCTGGCAGCCCCCGCAGTCCAGCGCCCCCTCCTGGTCACGGGATGGCGAGCGGGACGACGGCGTTCGCTCCCCCGGCCTCGACATCATGTCCACGATACCGGCGTTGTACAGTGCGCGTCTGGCATAATCGTACACTTCCTTGGAGGTCCGACGGATGTCGAATACATACTTCTTGCCCAGGTTGATGTTCTCATTGAGGAAAAGTGAAGCCAGGTGACCCTTGAAATCCCGGCTGTATTGCATCATGACAGCGTTTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267167 True 1679 TUCP 0.44 2 10388136 10392378

Neighbor

gene id symbol gene type direction distance location
CI01000054_10246428_10247072 NA coding upstream 141013 10246428 ~ 10247123 (+)
CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding upstream 168202 10215898 ~ 10219934 (+)
CI01000054_10199933_10212166 PRRC2A coding upstream 175626 10199933 ~ 10212510 (+)
CI01000054_10180219_10184702 NEU1 coding upstream 203395 10180150 ~ 10184741 (+)
CI01000054_10172867_10177625 NEU1 coding upstream 209252 10172867 ~ 10178884 (+)
CI01000054_10420267_10420899 NA coding downstream 27778 10420156 ~ 10422089 (+)
CI01000054_10467566_10471168 NA coding downstream 75188 10467566 ~ 10471477 (+)
CI01000054_10508500_10513655 NA coding downstream 116122 10508500 ~ 10513857 (+)
CI01000054_10601018_10615939 NA coding downstream 208596 10600974 ~ 10615954 (+)
CI01000054_10751348_10752449 NA coding downstream 358917 10751295 ~ 10752511 (+)
G235557 NA non-coding upstream 7221 10380714 ~ 10380915 (+)
G235522 NA non-coding upstream 101445 10283939 ~ 10286691 (+)
G235508 NA non-coding upstream 150236 10237549 ~ 10237900 (+)
G235502 NA non-coding upstream 198198 10189691 ~ 10189938 (+)
G235501 NA non-coding upstream 198483 10189432 ~ 10189653 (+)
G235562 NA non-coding downstream 3966 10396344 ~ 10412895 (+)
G235899 NA non-coding downstream 23072 10415450 ~ 10415717 (+)
G235902 NA non-coding downstream 26423 10418801 ~ 10419141 (+)
G235915 NA non-coding downstream 45480 10437858 ~ 10438473 (+)
G235932 NA non-coding downstream 51050 10443428 ~ 10443646 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2058548 8325126 ~ 8329716 (+)
G233306 NA other upstream 2083187 8304599 ~ 8304949 (+)
G233024 NA other upstream 2778243 7567523 ~ 7609893 (+)
G232870 NA other upstream 3499633 6887912 ~ 6888503 (+)
G232659 NA other upstream 4012242 6374850 ~ 6375894 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1172598 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1240598 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1255601 11647959 ~ 11649495 (+)
G236874 NA other downstream 1421310 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 2492524 12886994 ~ 12902006 (+)

Expression


Co-expression Network