G235902


Basic Information

Item Value
gene id G235902
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10418801 ~ 10419141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267545
CCGACTTTTGAACTGTAGTTAATATTGTGATGATGAAGATTTTGTGAGACACAACCAAGTCAACAAATCAACATCAAAAACTTCTCATCTTGTGATGAGAACCCTGAAGGTAATAATCAGTGAAGATTAACAAAAACATATCTGAGGAAAGACTTCTTCATACTCCTTGACATTGAGTTCGTCTCTGTGAGTCTCTGATGCATCTTCTTTGAGGGGGGGTGTGACAGTAAGTGATTTCTGTAAAAGCCTCTGGGGCCACGTGAGATATTGCAACCCTATGTGCACAGACAGAGGTTCAATCTTACTCTAATCATTCAGAGTTATTTTGACAGGGATAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267545 True 341 lncRNA 0.40 1 10418801 10419141

Neighbor

gene id symbol gene type direction distance location
CI01000054_10246428_10247072 NA coding upstream 171678 10246428 ~ 10247123 (+)
CI01000054_10215898_10219704 CK2B, BRAFLDRAFT_59924, CSNK2B coding upstream 198867 10215898 ~ 10219934 (+)
CI01000054_10199933_10212166 PRRC2A coding upstream 206291 10199933 ~ 10212510 (+)
CI01000054_10180219_10184702 NEU1 coding upstream 234060 10180150 ~ 10184741 (+)
CI01000054_10172867_10177625 NEU1 coding upstream 239917 10172867 ~ 10178884 (+)
CI01000054_10420267_10420899 NA coding downstream 1015 10420156 ~ 10422089 (+)
CI01000054_10467566_10471168 NA coding downstream 48425 10467566 ~ 10471477 (+)
CI01000054_10508500_10513655 NA coding downstream 89359 10508500 ~ 10513857 (+)
CI01000054_10601018_10615939 NA coding downstream 181833 10600974 ~ 10615954 (+)
CI01000054_10751348_10752449 NA coding downstream 332154 10751295 ~ 10752511 (+)
G235899 NA non-coding upstream 3084 10415450 ~ 10415717 (+)
G235562 NA non-coding upstream 5906 10396344 ~ 10412895 (+)
G235557 NA non-coding upstream 37886 10380714 ~ 10380915 (+)
G235522 NA non-coding upstream 132110 10283939 ~ 10286691 (+)
G235508 NA non-coding upstream 180901 10237549 ~ 10237900 (+)
G235915 NA non-coding downstream 18717 10437858 ~ 10438473 (+)
G235932 NA non-coding downstream 24287 10443428 ~ 10443646 (+)
G235968 NA non-coding downstream 35705 10454846 ~ 10455284 (+)
G236023 NA non-coding downstream 136679 10555820 ~ 10556236 (+)
G236036 NA non-coding downstream 169933 10589074 ~ 10591197 (+)
G235560 NA other upstream 26423 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 2089213 8325126 ~ 8329716 (+)
G233306 NA other upstream 2113852 8304599 ~ 8304949 (+)
G233024 NA other upstream 2808908 7567523 ~ 7609893 (+)
G232870 NA other upstream 3530298 6887912 ~ 6888503 (+)
CI01000054_11564820_11568338 S100V2 other downstream 1145835 11564820 ~ 11568999 (+)
CI01000054_11633235_11635069 PRF1.8 other downstream 1213835 11632959 ~ 11635103 (+)
CI01000054_11648262_11648786 NA other downstream 1228838 11647959 ~ 11649495 (+)
G236874 NA other downstream 1394547 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 2465761 12886994 ~ 12902006 (+)

Expression


Co-expression Network