Gene
RNA
| Item | Value |
|---|---|
| gene id | G236195 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000054 |
| NCBI id | null |
| chromosome length | 13006764 |
| location | 10926963 ~ 10949688 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU267861 | False | 267 | lncRNA | 0.31 | 3 | 10926963 | 10949688 |
| TU267862 | True | 274 | lncRNA | 0.30 | 3 | 10941610 | 10949688 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000054_10905705_10908903 | C1GALT1 | coding | upstream | 17907 | 10902548 ~ 10909056 (+) |
| CI01000054_10884460_10894800 | C1GALT1 | coding | upstream | 32009 | 10881584 ~ 10894954 (+) |
| CI01000054_10805413_10815170 | ASNS | coding | upstream | 111604 | 10805413 ~ 10815359 (+) |
| CI01000054_10797926_10802248 | NA | coding | upstream | 124005 | 10797850 ~ 10802958 (+) |
| CI01000054_10759809_10795763 | PARD6G, PARD6GB | coding | upstream | 131183 | 10759809 ~ 10795780 (+) |
| CI01000054_10964288_10964566 | UMAD1 | coding | downstream | 14600 | 10964288 ~ 10964649 (+) |
| CI01000054_10985849_11004067 | GLCCI1 | coding | downstream | 34400 | 10984088 ~ 11004096 (+) |
| CI01000054_11032632_11091062 | RIMS3 | coding | downstream | 82944 | 11032632 ~ 11091062 (+) |
| CI01000054_11126599_11136327 | PTP4A3.L, PTP4A3, MGC131305 | coding | downstream | 174933 | 11124621 ~ 11137242 (+) |
| CI01000054_11142387_11149427 | NA | coding | downstream | 192294 | 11141982 ~ 11150462 (+) |
| G236150 | NA | non-coding | upstream | 76656 | 10850093 ~ 10850307 (+) |
| G236149 | NA | non-coding | upstream | 79870 | 10846892 ~ 10847093 (+) |
| G236128 | NA | non-coding | upstream | 188079 | 10738567 ~ 10738884 (+) |
| G236115 | NA | non-coding | upstream | 197636 | 10729053 ~ 10729327 (+) |
| G236176 | NA | non-coding | downstream | 64443 | 11014131 ~ 11075365 (+) |
| G236249 | NA | non-coding | downstream | 277038 | 11226726 ~ 11233234 (+) |
| G236257 | NA | non-coding | downstream | 294375 | 11244063 ~ 11244283 (+) |
| G236222 | NA | non-coding | downstream | 327723 | 11277411 ~ 11279005 (+) |
| G235560 | NA | other | upstream | 534585 | 10388136 ~ 10392378 (+) |
| CI01000054_08325126_08329621 | HPCAL4, VSNL1, VSNL1.S | other | upstream | 2597375 | 8325126 ~ 8329716 (+) |
| G233306 | NA | other | upstream | 2622014 | 8304599 ~ 8304949 (+) |
| G233024 | NA | other | upstream | 3317070 | 7567523 ~ 7609893 (+) |
| G232870 | NA | other | upstream | 4038460 | 6887912 ~ 6888503 (+) |
| CI01000054_11564820_11568338 | S100V2 | other | downstream | 615288 | 11564820 ~ 11568999 (+) |
| CI01000054_11633235_11635069 | PRF1.8 | other | downstream | 683288 | 11632959 ~ 11635103 (+) |
| CI01000054_11648262_11648786 | NA | other | downstream | 698291 | 11647959 ~ 11649495 (+) |
| G236874 | NA | other | downstream | 864000 | 11813688 ~ 11816475 (+) |
| CI01000054_12887165_12901376 | NA | other | downstream | 1935214 | 12886994 ~ 12902006 (+) |
