G236570


Basic Information

Item Value
gene id G236570
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 10964298 ~ 10966446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268290
TAATGTAATCAAATAAGATTTTAATTAAACAACATCATTACATTCCGCTCATGCTCAAAATTTAGCATAAACATCATGTGGGATCAGAATCAATGAGGAATTCTGTTCCAGATATAAATCAATAAGGAATCCATAGTTAAGGTGATGGCATAATATTTACCTGAAAAAAGTGGCATTAAATTATTTTACAGACATTTTAAAGGGCAAAGACAGCACAACGCAAACTTTGATTACTTCAGTACAGTGTTTTGAAAAGTGACTGAGATAAATTAGGAGGAACCTATTAACCTTAGATGAAGTAACTGTCAGACAAATCAAAACAAAGAGATAAAAAGTGAGATTTGATGTGATATTAAGCGAATAAACTAAACCGATATCAAGTAAAGTACAGAGGATGTAAAGGAGACACAGCTAAACTCCTGAGTGCATTGTTTAAATAGCAGCACGCACTATAAAACCCATCCATTAACTGAAATTCAGATGAAGAAAAAAAAAAAAAACCCAGATCAACAACCATGTGACCTATTCAAAAAGAACAGTAAATCCTATTAAAATCCATGTGCATGTTTTTGCAATTAAACATTGTTCAGAATACATATCTGCCTCCCAAAATGGCCTGCTATCTAGCAGAACTTCAAAACTTCATGCATTAAAACCAAACAACAACAGTAGAGGTACAATGTTCACACACACACACAAAAAAAAAAAATATATATATATATATAAAACAAAGGGATATAATGTTGGCCTATTTATAATGAGCACTGCAATGTTCGTCTCTCAATTTTAAGTGCAATCCTTTCACTAAGGTGATGTGTGTATTTTTTGTGATGTAAAAATACTTCATATCCCAACTTAATATGCGGAAACAACTAGAAGTAAGCTATATTCTATACTGATTACCCTGAAAAGTGTAAACACTGCATTACTATCAAAATATTGTTCTGTATGAGCATCCTGAACAGCCCGGCACAGCGACACTGACTCAACCAATGGCGTCAGTTTAGGGTGGGACTATCTGTTTGGTTGACCAATGGCAGACAGGGGAGTGTTTAAGGTTTACTGGTACTCACTGTAGAGTTACAGCAAATGTAGCGGACTAGCCAAAGGCCTTTATGATTGCCATTTTTAATATTTATATATATTTTAAAAGTATAATTTATATTTGAATTAAATACTTCTATCTATTAACAAATTATTTATTTTAGATATGTTTAAAGAATTACATTGCTGGGTGACTAGTTACTATAAAATCATTCTTTCTGTGTATCATGACTGGTTTAAGTGAACGATCTGCAAGCAAACTTCTTGAAACCGATTCCATAAATTACAGTAAGTCTTTGCAGAACTAAGAAGAAACTGAGGAAGGCTAACATAGACTGCGGCGTCTGAAACATCACACAACCGAATGCAACTATTCAGAAACATAGCATCGAAACTATTTCAGCATATCATCTTATGCTACAGGACCCCACAGAGTCAAAATGCAAAATTGCACAGATTTTACACCCGTAAAATTTGAACTACATTTGAAAAATGTAAAGCCATAGGTCATCTTATAAATACTCATCTACTGTTTTTAAATGAGGCGGTAACACTCAGCTCACACAATAAAGTGTAAGATCCTGAGAGACTGTAAACCATTTTGATGCGAACTTCACTAACTTATTTAAACTAAATGGAAAATATGTTCGTTTGAGCCCAACACCCTATAGTCAGTGACCGATTTTTGTCAGCTAACTGAAACTAGATCTTCATTTATTTAAGAGGCAAGCGGTTAAGGAGAATCTTGACAACCAAATGCTCGTAGTTCATCACGTGTTAGTGATATAACTGATGTGAGAGTCATGGCTCACAAAGCACAGAGTTCTCCAGAGAGAAGTCATAACGAAAGTTGGCTAGTTTGTCATTTATGTCAGAAGGCAAGGTGATATCTGTTACAAAGGGCAGGCCCGCCTGCATGGCCAGGATATGTGGTGCTAAAGTGAAAGGTATATCTCCTAGAAGTTCAGTGAGAGCAGGGGTGGCGTCTACACTGTGCGTTTCTGAGGACATCTTAGCAGATGTGGGCTGGGAGGAAGGCTGAGCCGTCTCTGTAAATCCTCTGTTCCTGG
>TU268291
TAATGTAATCAAATAAGATTTTAATTAAACAACATCATTACATTCCGCTCATGCTCAAAATTTAGCATAAACATCATGTGGGATCAGAATCAATGAGGAATTCTGTTCCAGATATAAATCAATAAGGAATCCATAGTTAAGGTGATGGCATAATATTTACCTGAAAAAAGTGGCATTAAATTATTTTACAGACATTTTAAAGGGCAAAGACAGCACAACGCAAACTTTGATTACTTCAGTACAGTGTTTTGAAAAGTGACTGAGATAAATTAGGAGGAACCTATTAACCTTAGATGAAGTAACTGTCAGACAAATCAAAACAAAGAGATAAAAAGTGAGATTTGATGTGATATTAAGCGAATAAACTAAACCGATATCAAGTAAAGTACAGAGGATGTAAAGGAGACACAGCTAAACTCCTGAGTGCATTGTTTAAATAGCAGCACGCACTATAAAACCCATCCATTAACTGAAATTCAGATGAAGAAAAAAAAAAAAAACCCAGATCAACAACCATGTGACCTATTCAAAAAGAACAGTAAATCCTATTAAAATCCATGTGCATGTTTTTGCAATTAAACATTGTTCAGAATACATATCTGCCTCCCAAAATGGCCTGCTATCTAGCAGAACTTCAAAACTTCATGCATTAAAACCAAACAACAACAGTAGAGGTACAATGTTCACACACACACACAAAAAAAAAAAAATATATATATATATATAAAACAAAGGGATATAATGTTGGCCTATTTATAATGAGCACTGCAATGTTCGTCTCTCAATTTTAAGTGCAATCCTTTCACTAAGGTGATGTGTGTATTTTTTGTGATGTAAAAATACTTCATATCCCAACTTAATATGCGGAAACAACTAGAAGTAAGCTATATTCTATACTGATTACCCTGAAAAGTGTAAACACTGCATTACTATCAAAATATTGTTCTGTATGAGCATCCTGAACAGCCCGGCACAGCGACACTGACTCAACCAATGGCGTCAGTTTAGGGTGGGACTATCTGTTTGGTTGACCAATGGCAGACAGGGGAGTGTTTAAGGTTTACTGGTACTCACTGTAGAGTTACAGCAAATGTAGCGGACTAGCCAAAGGCCTTTATGATTGCCATTTTTAATATTTATATATATTTTAAAAGTATAATTTATATTTGAATTAAATACTTCTATCTATTAACAAATTATTTATTTTAGATATGTTTAAAGAATTACATTGCTGGGTGACTAGTTACTATAAAATCATTCTTTCTGTGTATCATGACTGGTTTAAGTGAACGATCTGCAAGCAAACTTCTTGAAACCGATTCCATAAATTACAGTAAGTCTTTGCAGAACTAAGAAGAAACTGAGGAAGGCTAACATAGACTGCGGCGTCTGAAACATCACACAACCGAATGCAACTATTCAGAAACATAGCATCGAAACTATTTCAGCATATCATCTTATGCTACAGGACCCCACAGAGTCAAAATGCAAAATTGCACAGATTTTACACCCGTAAAATTTGAACTACATTTGAAAAATGTAAAGCCATAGGTCATCTTATAAATACTCATCTACTGTTTTTAAATGAGGCGGTAACACTCAGCTCACACAATAAAGTGTAAGATCCTGAGAGACTGTAAACCATTTTGATGCGAACTTCACTAACTTATTTAAACTAAATGGAAAATATGTTCGTTTGAGCCCAACACCCTATAGTCAGTGACCGATTTTTGTCAGCTAACTGAAACTAGATCTTCATTTATTTAAGAGGCAAGCGGTTAAGGAGAATCTTGACAACCAAATGCTCGTAGTTCATCACGTGTTAGTGATATAACTGATGTGAGAGTCATGGCTCACAAAGCACAGAGTTCTCCAGAGAGAAGTCATAACGAAAGTTGGCTAGTTTGTCATTTATGTCAGAAGGCAAGGTGATATCTGTTACAAAGGGCAGGCCCGCCTGCATGGCCAGGATATGTGGTGCTAAAGTGAAAGGTATATCTCCTAGAAGTTCAGTGAGAGCAGGGGTGGCGTCTACACTGTGCGTTTCTGAGGACATCTTAGCAGATGTGGGCTGGGAGGAAGGCTGAGCCGTCTCTGTAAATCCTCTGTTCCTGG
>TU268292
TAATGTAATCAAATAAGATTTTAATTAAACAACATCATTACATTCCGCTCATGCTCAAAATTTAGCATAAACATCATGTGGGATCAGAATCAATGAGGAATTCTGTTCCAGATATAAATCAATAAGGAATCCATAGTTAAGGTGATGGCATAATATTTACCTGAAAAAAGTGGCATTAAATTATTTTACAGACATTTTAAAGGGCAAAGACAGCACAACGCAAACTTTGATTACTTCAGTACAGTGTTTTGAAAAGTGACTGAGATAAATTAGGAGGAACCTATTAACCTTAGATGAAGTAACTGTCAGACAAATCAAAACAAAGAGATAAAAAGTGAGATTTGATGTGATATTAAGCGAATAAACTAAACCGATATCAAGTAAAGTACAGAGGATGTAAAGGAGACACAGCTAAACTCCTGAGTGCATTGTTTAAATAGCAGCACGCACTATAAAACCCATCCATTAACTGAAATTCAGATGAAGAAAAAAAAAAAAAACCCAGATCAACAACCATGTGACCTATTCAAAAAGAACAGTAAATCCTATTAAAATCCATGTGCATGTTTTTGCAATTAAACATTGTTCAGAATACATATCTGCCTCCCAAAATGGCCTGCTATCTAGCAGAACTTCAAAACTTCATGCATTAAAACCAAACAACAACAGTAGAGGTACAATGTTCACACACACACACAAAAAAAAAAATATATATATATATATATAAAACAAAGGGATATAATGTTGGCCTATTTATAATGAGCACTGCAATGTTCGTCTCTCAATTTTAAGTGCAATCCTTTCACTAAGGTGATGTGTGTATTTTTTGTGATGTAAAAATACTTCATATCCCAACTTAATATGCGGAAACAACTAGAAGTAAGCTATATTCTATACTGATTACCCTGAAAAGTGTAAACACTGCATTACTATCAAAATATTGTTCTGTATGAGCATCCTGAACAGCCCGGCACAGCGACACTGACTCAACCAATGGCGTCAGTTTAGGGTGGGACTATCTGTTTGGTTGACCAATGGCAGACAGGGGAGTGTTTAAGGTTTACTGGTACTCACTGTAGAGTTACAGCAAATGTAGCGGACTAGCCAAAGGCCTTTATGATTGCCATTTTTAATATTTATATATATTTTAAAAGTATAATTTATATTTGAATTAAATACTTCTATCTATTAACAAATTATTTATTTTAGATATGTTTAAAGAATTACATTGCTGGGTGACTAGTTACTATAAAATCATTCTTTCTGTGTATCATGACTGGTTTAAGTGAACGATCTGCAAGCAAACTTCTTGAAACCGATTCCATAAATTACAGTAAGTCTTTGCAGAACTAAGAAGAAACTGAGGAAGGCTAACATAGACTGCGGCGTCTGAAACATCACACAACCGAATGCAACTATTCAGAAACATAGCATCGAAACTATTTCAGCATATCATCTTATGCTACAGGACCCCACAGAGTCAAAATGCAAAATTGCACAGATTTTACACCCGTAAAATTTGAACTACATTTGAAAAATGTAAAGCCATAGGTCATCTTATAAATACTCATCTACTGTTTTTAAATGAGGCGGTAACACTCAGCTCACACAATAAAGTGTAAGATCCTGAGAGACTGTAAACCATTTTGATGCGAACTTCACTAACTTATTTAAACTAAATGGAAAATATGTTCGTTTGAGCCCAACACCCTATAGTCAGTGACCGATTTTTGTCAGCTAACTGAAACTAGATCTTCATTTATTTAAGAGGCAAGCGGTTAAGGAGAATCTTGACAACCAAATGCTCGTAGTTCATCACGTGTTAGTGATATAACTGATGTGAGAGTCATGGCTCACAAAGCACAGAGTTCTCCAGAGAGAAGTCATAACGAAAGTTGGCTAGTTTGTCATTTATGTCAGAAGGCAAGGTGATATCTGTTACAAAGGGCAGGCCCGCCTGCATGGCCAGGATATGTGGTGCTAAAGTGAAAGGTATATCTCCTAGAAGTTCAGTGAGAGCAGGGGTGGCGTCTACACTGTGCGTTTCTGAGGACATCTTAGCAGATGTGGGCTGGGAGGAAGGCTGAGCCGTCTCTGTAAATCCTCTGTTCCTGG
>TU268298
TAATGTAATCAAATAAGATTTTAATTAAACAACATCATTACATTCCGCTCATGCTCAAAATTTAGCATAAACATCATGTGGGATCAGAATCAATGAGGAATTCTGTTCCAGATATAAATCAATAAGGAATCCATAGTTAAGGTGATGGCATAATATTTACCTGAAAAAAGTGGCATTAAATTATTTTACAGACATTTTAAAGGGCAAAGACAGCACAACGCAAACTTTGATTACTTCAGTACAGTGTTTTGAAAAGTGACTGAGATAAATTAGGAGGAACCTATTAACCTTAGATGAAGTAACTGTCAGACAAATCAAAACAAAGAGATAAAAAGTGAGATTTGATGTGATATTAAGCGAATAAACTAAACCGATATCAAGTAAAGTACAGAGGATGTAAAGGAGACACAGCTAAACTCCTGAGTGCATTGTTTAAATAGCAGCACGCACTATAAAACCCATCCATTAACTGAAATTCAGATGAAGAAAAAAAAAAAAAACCCAGATCAACAACCATGTGACCTATTCAAAAAGAACAGTAAATCCTATTAAAATCCATGTGCATGTTTTTGCAATTAAACATTGTTCAGAATACATATCTGCCTCCCAAAATGGCCTGCTATCTAGCAGAACTTCAAAACTTCATGCATTAAAACCAAACAACAACAGTAGAGGTACAATGTTCACACACACACACAAAAAAAAAATATATATATATATATAAAACAAAGGGATATAATGTTGGCCTATTTATAATGAGCACTGCAATGTTCGTCTCTCAATTTTAAGTGCAATCCTTTCACTAAGGTGATGTGTGTATTTTTTGTGATGTAAAAATACTTCATATCCCAACTTAATATGCGGAAACAACTAGAAGTAAGCTATATTCTATACTGATTACCCTGAAAAGTGTAAACACTGCATTACTATCAAAATATTGTTCTGTATGAGCATCCTGAACAGCCCGGCACAGCGACACTGACTCAACCAATGGCGTCAGTTTAGGGTGGGACTATCTGTTTGGTTGACCAATGGCAGACAGGGGAGTGTTTAAGGTTTACTGGTACTCACTGTAGAGTTACAGCAAATGTAGCGGACTAGCCAAAGGCCTTTATGATTGCCATTTTTAATATTTATATATATTTTAAAAGTATAATTTATATTTGAATTAAATACTTCTATCTATTAACAAATTATTTATTTTAGATATGTTTAAAGAATTACATTGCTGGGTGACTAGTTACTATAAAATCATTCTTTCTGTGTATCATGACTGGTTTAAGTGAACGATCTGCAAGCAAACTTCTTGAAACCGATTCCATAAATTACAGTAAGTCTTTGCAGAACTAAGAAGAAACTGAGGAAGGCTAACATAGACTGCGGCGTCTGAAACATCACACAACCGAATGCAACTATTCAGAAACATAGCATCGAAACTATTTCAGCATATCATCTTATGCTACAGGACCCCACAGAGTCAAAATGCAAAATTGCACAGATTTTACACCCGTAAAATTTGAACTACATTTGAAAAATGTAAAGCCATAGGTCATCTTATAAATACTCATCTACTGTTTTTAAATGAGGCGGTAACACTCAGCTCACACAATAAAGTGTAAGATCCTGAGAGACTGTAAACCATTTTGATGCGAACTTCACTAACTTATTTAAACTAAATGGAAAATATGTTCGTTTGAGCCCAACACCCTATAGTCAGTGACCGATTTTTGTCAGCTAACTGAAACTAGATCTTCATTTATTTAAGAGGCAAGCGGTTAAGGAGAATCTTGACAACCAAATGCTCGTAGTTCATCACGTGTTAGTGATATAACTGATGTGAGAGTCATGGCTCACAAAGCACAGAGTTCTCCAGAGAGAAGTCATAACGAAAGTTGGCTAGTTTGTCATTTATGTCAGAAGGCAAGGTGATATCTGTTACAAAGGGCAGGCCCGCCTGCATGGCCAGGATATGTGGTGCTAAAGTGAAAGGTATATCTCCTAGAAGTTCAGTGAGAGCAGGGGTGGCGTCTACACTGTGCGTTTCTGAGGACATCTTAGCAGATGTGGGCTGGGAGGAAGGCTGAGCCGTCTCTGTAAATCCTCTGTTCCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268290 False 2114 lncRNA 0.36 2 10964298 10966446
TU268291 False 2115 lncRNA 0.36 2 10964298 10966446
TU268292 False 2115 lncRNA 0.36 2 10964298 10966446
TU268298 True 2112 lncRNA 0.36 2 10964298 10966446

Neighbor

gene id symbol gene type direction distance location
CI01000054_10949424_10950271 RPA3 coding downstream 12842 10949319 ~ 10951456 (-)
CI01000054_10910820_10938477 COL28A1 coding downstream 25821 10910374 ~ 10938477 (-)
CI01000054_10872970_10881017 SDHAF3 coding downstream 82803 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 coding downstream 144936 10816015 ~ 10819362 (-)
CI01000054_10645438_10672411 NA coding downstream 291617 10645142 ~ 10672681 (-)
CI01000054_11097818_11099299 NA coding upstream 131262 11097708 ~ 11099334 (-)
CI01000054_11184013_11193925 EYA3, EYA2 coding upstream 217284 11183730 ~ 11193925 (-)
CI01000054_11209592_11214961 NA coding upstream 241603 11208049 ~ 11215113 (-)
CI01000054_11222307_11238293 NA coding upstream 255725 11222171 ~ 11239750 (-)
CI01000054_11354957_11355910 NA coding upstream 388194 11354640 ~ 11356188 (-)
G236555 NA non-coding downstream 59569 10903132 ~ 10904729 (-)
G236554 NA non-coding downstream 65347 10898467 ~ 10898951 (-)
G236551 NA non-coding downstream 68979 10894931 ~ 10895319 (-)
G236542 NA non-coding downstream 96300 10867787 ~ 10867998 (-)
G236533 NA non-coding downstream 115743 10848288 ~ 10848555 (-)
G236596 NA non-coding upstream 34881 11001327 ~ 11001582 (-)
G236591 NA non-coding upstream 38611 11005057 ~ 11005559 (-)
G236601 NA non-coding upstream 52229 11018675 ~ 11032856 (-)
G236633 NA non-coding upstream 169101 11135547 ~ 11137222 (-)
G236662 NA non-coding upstream 186294 11152740 ~ 11153017 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1097086 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 1478911 9483147 ~ 9484282 (-)
G235216 NA other downstream 1715760 9248039 ~ 9248538 (-)
G236748 NA other upstream 318748 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 812444 11778890 ~ 11781880 (-)

Expression


Co-expression Network