G236601


Basic Information

Item Value
gene id G236601
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11018675 ~ 11032856 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268340
CTTGCTCCACTGTGACAGACCCACAATAGCGACCATCTTGGCTCCGAGGCTGGAGCGACGTTTCTTGTTTCCGACCAGGCCTGTGGCATCGGGCCCCGTGCTGCTGGGGCTTTTCTCCAAGCTGTACATGGCCCCACTTATGCTGGAACTGCGAACCACGTTCCGGGCTGCCACTGCACTTATCCCCCCTGGGCTGGGTACATCCACTGAGCTGCTGAGCATCATGGTCCCACACAAGCCTCTAGGCACAGGGCTGGACTGAGGCGGCAAACAGCGAGCAGAAAGAGGCACGGGATCGTTTCAGTCAGTCAGATAATGGTGTGTTTCTGTCGTGTCGTTGCAGATAATGTCATTGTTTGGGTTTGTTTTATGTTCGCGTGCCAGTGTCTGGACGGTTCTTGCATCCACAGAAGAGCGCGACAGAGCAACTGACGAGTGAGCGGCGCGCTGCTGATCCAGCCTCCTCACAGCGAGCGCGTCTCCATGGTTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268340 True 491 lncRNA 0.57 2 11018675 11032856

Neighbor

gene id symbol gene type direction distance location
CI01000054_10949424_10950271 RPA3 coding downstream 67219 10949319 ~ 10951456 (-)
CI01000054_10910820_10938477 COL28A1 coding downstream 80198 10910374 ~ 10938477 (-)
CI01000054_10872970_10881017 SDHAF3 coding downstream 137180 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 coding downstream 199313 10816015 ~ 10819362 (-)
CI01000054_10645438_10672411 NA coding downstream 345994 10645142 ~ 10672681 (-)
CI01000054_11097818_11099299 NA coding upstream 64852 11097708 ~ 11099334 (-)
CI01000054_11184013_11193925 EYA3, EYA2 coding upstream 150874 11183730 ~ 11193925 (-)
CI01000054_11209592_11214961 NA coding upstream 175193 11208049 ~ 11215113 (-)
CI01000054_11222307_11238293 NA coding upstream 189315 11222171 ~ 11239750 (-)
CI01000054_11354957_11355910 NA coding upstream 321784 11354640 ~ 11356188 (-)
G236591 NA non-coding downstream 13116 11005057 ~ 11005559 (-)
G236596 NA non-coding downstream 17093 11001327 ~ 11001582 (-)
G236570 NA non-coding downstream 52229 10964298 ~ 10966446 (-)
G236555 NA non-coding downstream 113946 10903132 ~ 10904729 (-)
G236554 NA non-coding downstream 119724 10898467 ~ 10898951 (-)
G236633 NA non-coding upstream 102691 11135547 ~ 11137222 (-)
G236662 NA non-coding upstream 119884 11152740 ~ 11153017 (-)
G236663 NA non-coding upstream 120277 11153133 ~ 11153374 (-)
G236664 NA non-coding upstream 125715 11158571 ~ 11158804 (-)
G236666 NA non-coding upstream 134768 11167624 ~ 11167944 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1151463 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 1533288 9483147 ~ 9484282 (-)
G235216 NA other downstream 1770137 9248039 ~ 9248538 (-)
G236748 NA other upstream 252338 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 746034 11778890 ~ 11781880 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G130858 rims3,LOC107672861,LOC107598211,LOC107702460,LOC107731575,LOC107571463 non-coding NC_056717.1 CM032086.1 5659533 ~ 5670532 (+)