G236633


Basic Information

Item Value
gene id G236633
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11135547 ~ 11137222 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268372
TGTGTTCTTAAAAAACAGAGGAAAGCAACTTTAAACCACCGTCTTGTCTGGTAATTCATTCATATAGGGCCTTTTTTACCATCTGATCTCTGTTGACCTGACTGGACAAGTATCATGGACAGATTGCCTCCAGGAAGCCCTGAAGTCCTAACACATTAAAATTACTCCAACAAACACAAGGTTTGATTTTAAGCACATAAACACGCATAAGCATTTTCGCAGTTAAATTCCTTGGCCTTCGCTGGCCTTCATATGTAGCTTTCAGAAACCCTTTAGTGTCTGGCACTCAACCTAATAGAAATAGCAAAGAGTTGCTTTATGAAAAAGAAATAACTTTCACATAAGCCCTTCATTAGTCCACTTTAACCGTTGTTTGCTCATAAAACAAAAGCATCATGGAAAAGGTCAACAGTAAAAAGATTTGTGCTGAAAACTAAAAGTGTTAAAGGAACCGTAGTTGTCTAAAAATCAGACTCCTGGCAGGGAAGAGTAGGAAAGCAGTAGAAAGAAAAATAAGTAGTAGAGAGAGTGAGAAAGAGCACAAATTTTGTCCATGATTCACATTATCACACCGCCTGGCTCTTTTAGACAATCACAATCATTTGAGGCATGATTAGGGTGTCAGTCCTGGTGCAGGGTCAAAGGTCAGAGGTTGCCTTCGTCGTATCTCATTAACCTCAGAGATACGTAGCCTTTCAGACCTCTAAGTCGTAAGTCTCGGAAAAGCCATGGCAGTATCCACACCACAATCAGAGTGAGGAGGATTTTAGGCACCAGTGGGGTTTTCATCCAGACCGAATCGGTTCATATTTTTATAGCAAATCAGCAAAGTGCATCAGTTGTGGCCCAGTCCATCAGGTTCAGCTTGGTTCAGAACAGTAGGGTGAGGGTGCAGTCACATGATGCAGCACTTGTTCTTGAAAATGTGCGGGTGCTTGTAGCGCAGTCTCTGTTTGGGCCGATATTTCTCTAGATACGTCAGCTGCTTGCTGTTTATTGCACCCCTGCGCTTCCTGTGAAATCAAAAAACGTCTATCAGCAAGGTGATTTACAATTTCATCACGTTACAATTGAATGACTTCCTTCAAGAAACATGGCAGATACAAATGGCTCGCAAGCTCATGTTTCACTCCAGCCCACATTGGACTGAAAATAGCATTGAAAACACAAGGAACAGTAACTGAGGGGGCGGAGCTTAAAAAAAAGAATAAATTGCAAATCTTTTGCGTATTGAAAGCTTTAAGCTTGGCCTTGCTATCAAAAGGTACTCTGGCAAGCATAGCAACTGAGAACTAGTATTTAAGATCCACTTGCATGAATATAGCAGTTGACGTCAAGAGCTCAAGGTTTTTTGTCCTTGAAAGAAGTCAAGAGAGATGTACGTACTGTCGGATGAACTGGATGGCATCTTCGTACTTCATCCCACTTTCAATCAGTGCCACGGCCACAAGTACTGGAGCTCTACAGAAAAAAGAAAAAAAAACATTGAGAGAGATGTTACAAAAACAAGCAATGTCAAAAGTAATTTAGCTGTTTTTTGTACTTTTTGTATTCTTGCGTTTTATAAGAAATATATTTGTATATATATATATATATTTTTTACAGTTTTTGAATGTTTACTTAAAGGGTTAGTTCACCCAAAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268372 True 1646 lncRNA 0.40 2 11135547 11137222

Neighbor

gene id symbol gene type direction distance location
CI01000054_11097818_11099299 NA coding downstream 36213 11097708 ~ 11099334 (-)
CI01000054_10949424_10950271 RPA3 coding downstream 184091 10949319 ~ 10951456 (-)
CI01000054_10910820_10938477 COL28A1 coding downstream 197070 10910374 ~ 10938477 (-)
CI01000054_10872970_10881017 SDHAF3 coding downstream 254052 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 coding downstream 316185 10816015 ~ 10819362 (-)
CI01000054_11184013_11193925 EYA3, EYA2 coding upstream 46508 11183730 ~ 11193925 (-)
CI01000054_11209592_11214961 NA coding upstream 70827 11208049 ~ 11215113 (-)
CI01000054_11222307_11238293 NA coding upstream 84949 11222171 ~ 11239750 (-)
CI01000054_11354957_11355910 NA coding upstream 217418 11354640 ~ 11356188 (-)
CI01000054_11365718_11380961 THBS3B coding upstream 227798 11362295 ~ 11380961 (-)
G236601 NA non-coding downstream 102691 11018675 ~ 11032856 (-)
G236591 NA non-coding downstream 129988 11005057 ~ 11005559 (-)
G236596 NA non-coding downstream 133965 11001327 ~ 11001582 (-)
G236570 NA non-coding downstream 169101 10964298 ~ 10966446 (-)
G236555 NA non-coding downstream 230818 10903132 ~ 10904729 (-)
G236662 NA non-coding upstream 15518 11152740 ~ 11153017 (-)
G236663 NA non-coding upstream 15911 11153133 ~ 11153374 (-)
G236664 NA non-coding upstream 21349 11158571 ~ 11158804 (-)
G236666 NA non-coding upstream 30402 11167624 ~ 11167944 (-)
G236640 NA non-coding upstream 34520 11171742 ~ 11172107 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1268335 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 1650160 9483147 ~ 9484282 (-)
G235216 NA other downstream 1887009 9248039 ~ 9248538 (-)
G236748 NA other upstream 147972 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 641668 11778890 ~ 11781880 (-)

Expression


Co-expression Network