G236672


Basic Information

Item Value
gene id G236672
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11204719 ~ 11205657 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268412
CAGGAAACAAGGACCCATGCTTCTCCTCTCAGCCCAGAGGGGAGACAGCTAAGCAGCCACAGGAGCCTGATAACTGGGGTGATATTATGGATGTTGAATCTTCTGATCACCCCCCCTCTTTGGTGATGCTCTTGCAGGTATAGTGGAAGAAGATGATGATGAAGATGAGGAATTATCCCCCCATCTTCTAGACAATGATGAAGAGGAGAATGATGACACCATCCTCCCACCTAATTCATCTCGTCCACCTATAGTAGCCAGAGTAGACCAGTGTGTATGTGTGTGTCCTGGTAAACCCTGTATTATGGGGACAAAATGCTCTCACAAAGATGGCAATATCTGAAATCCCTGTGCTTGTGGGGACATTTTTTGGTCCTTATAAATCATACTGATGTTTTTTGAAAATGTAAAATTATTTGCCAACGCTGTTCACATTAGCACCATGACCCATGCGTGTAATGCTTACACAGGAGCCAGCCAATATTGAGCTGCCATTCGGACGTAAACACGGAAGCTCTGAACTGCGTTCAGTGCGTCAACTACGTACGAATCTGACAGGGTAGAGAAGAAATTGTTGAATAAAGTTGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTTGCTTCATAACATTAAGGTTGAACCACTGTAGTCACGTTGACTATTTTAACAATGTCTTTAATACCTTTCTGGACCTTGAATGACGGTAATTACGTTGCTTTCTATGGGGGATAAAAAAAAACTCATCAAAAATATCTTAATTTGTGTTCCAAAGATGAAAGGTCTTACAGTTTTGGAACGACACAAGGGTGAGTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAACAGTATTGTTGTGTGCCATCTCCACCAGGAAAAACTGGACAATATTGATGTGAATAAGCCAATAGTTAATTTGACCGGTG

Function

NR:

description
zinc finger protein 239-like isoform X3

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268412 True 939 lncRNA 0.41 1 11204719 11205657

Neighbor

gene id symbol gene type direction distance location
CI01000054_11184013_11193925 EYA3, EYA2 coding downstream 10794 11183730 ~ 11193925 (-)
CI01000054_11097818_11099299 NA coding downstream 105385 11097708 ~ 11099334 (-)
CI01000054_10949424_10950271 RPA3 coding downstream 253263 10949319 ~ 10951456 (-)
CI01000054_10910820_10938477 COL28A1 coding downstream 266242 10910374 ~ 10938477 (-)
CI01000054_10872970_10881017 SDHAF3 coding downstream 323224 10871104 ~ 10881495 (-)
CI01000054_11209592_11214961 NA coding upstream 2392 11208049 ~ 11215113 (-)
CI01000054_11222307_11238293 NA coding upstream 16514 11222171 ~ 11239750 (-)
CI01000054_11354957_11355910 NA coding upstream 148983 11354640 ~ 11356188 (-)
CI01000054_11365718_11380961 THBS3B coding upstream 159363 11362295 ~ 11380961 (-)
CI01000054_11387319_11406159 MTX1B, MTX1 coding upstream 181662 11387319 ~ 11407070 (-)
G236644 NA non-coding downstream 25600 11178241 ~ 11179119 (-)
G236669 NA non-coding downstream 29928 11174303 ~ 11174791 (-)
G236667 NA non-coding downstream 31248 11173239 ~ 11173471 (-)
G236640 NA non-coding downstream 32612 11171742 ~ 11172107 (-)
G236666 NA non-coding downstream 36775 11167624 ~ 11167944 (-)
G236646 NA non-coding upstream 11192 11216849 ~ 11221139 (-)
G236676 NA non-coding upstream 19206 11224863 ~ 11225911 (-)
G236689 NA non-coding upstream 38975 11244632 ~ 11244971 (-)
G236695 NA non-coding upstream 47717 11253374 ~ 11253749 (-)
G236701 NA non-coding upstream 52835 11258492 ~ 11258750 (-)
CI01000054_10817235_10819181 TAC1 other downstream 385374 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1337507 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 1719332 9483147 ~ 9484282 (-)
G235216 NA other downstream 1956181 9248039 ~ 9248538 (-)
G236748 NA other upstream 79537 11285194 ~ 11295784 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 573233 11778890 ~ 11781880 (-)

Expression


Co-expression Network