G236305


Basic Information

Item Value
gene id G236305
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11369095 ~ 11373596 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU267982
TTTTTTAGTATGCTACAGAATTAAGAATCAGACCATCAGAGTCTTTTTGACTGGGGTTGGGAACAAGTCTGCAGTTATCTGGGCCAGGAGGGAGGATATCTGGAATTCCATCGTTATCATCATCATCATCACATTCGTCCCCAGTGCCATCATTATCGGAGTCCAGCTGAGAACTGTTGGGCACTTCAGGACAGTTATCCCTCGTGTCCTGATATCCATCACCATCCATGTCCTTGTTTGTATCACATACATCTCCCACCAAATCGTTGTCCATATCTGACTGCAAAGGATCGTTGATCTCAGGACAGCTGTCACACGCGTCACCCACACCATCTCCGTCTCGGTCTGTTTGCATGGGATTGGGTATTTTAGGACAGTTATCCAACATGTTAGGGATGCCATCTCCATCTATATCATTGTCACAAATATCTCCTTTGCCATTGCCATCAGTATCAAGCTGATCTCCATTGGGAACGTTAGGGCAGTTGTCGCAAGCATCGCCATAGGAATCTGTGTCAGAGTTCTGCTGGTCCTTATTGGGCACCAAACGACAGTTGTCCTCAACATTTTTAATTCCATCTCCATCTGCATCCTCGTCACACTGATCACCAATCTCATCTCCATCTGTATCTTCTTGCCCAGAGTTTGGGGTATTCGCACAGTTATCCGCTCTGCAGTGTTTGTCGTTGTCAATGCATGGAAGAGGCTCATCAGGGTAACCATCAATGTCTGAGTCTGGACCACAAATGTTCCCATTACCTGCCCAGCCAACGTTACACAAGCAGGAAATGTCACTATTGCGGCCCATCACACAGTGTGCATTTACATCACAGGGGTTATAGCCCAGAGTTTCACACGTCCGCCTTGCAAAACAGCCTGCAGTCTGATTACCCACAAATCCTGCTTTACACTGGCCACACTTGAACGATCCCACAGTATTTATACAGACCGAGTTGGGAACACAGGCACTAGAGTACTCAGCACACTCATCAATATCACTACATTCCTGCTTGTGGCTCTTGGCAAACTCAAAACCAACTCCCCTGAGTGTTGGACCAGTGAATCCTATGGGACAGGACTCACAGGTGAAACCTTTAGCTGTGTTCACACAAAACTCTGCAGAGAAACAGGGCTGAGCAGTACACTATAACAAAGAGAGATATTGAGAGAAAAAAGAAATGTATGGCGAAAATGTAACTTATGTTTTAACTGCAACTTCCATTTTCTGCTGCAGCACTGTCTATATCAATATGCTATGTATTTGCTAAGATGTCATGAGTACGGCTATATAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267982 True 1294 lncRNA 0.45 9 11369095 11373596

Neighbor

gene id symbol gene type direction distance location
CI01000054_11289604_11337266 NA coding upstream 31715 11289604 ~ 11337380 (+)
CI01000054_11280613_11285395 NA coding upstream 83700 11280613 ~ 11285395 (+)
CI01000054_11171795_11178974 NA coding upstream 189986 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 203268 11160059 ~ 11165827 (+)
CI01000054_11154206_11157480 NA coding upstream 211265 11154129 ~ 11157830 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding downstream 35658 11409254 ~ 11413131 (+)
CI01000054_11536181_11537063 NA coding downstream 161161 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 191224 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 226910 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 259363 11632959 ~ 11635103 (+)
G236281 NA non-coding upstream 72094 11296149 ~ 11297001 (+)
G236222 NA non-coding upstream 90090 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 124812 11244063 ~ 11244283 (+)
G236249 NA non-coding upstream 135861 11226726 ~ 11233234 (+)
CI01000054_11142387_11149427 NA non-coding upstream 217479 11141982 ~ 11150462 (+)
G236362 NA non-coding downstream 133829 11507425 ~ 11507904 (+)
G236373 NA non-coding downstream 176008 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 223670 11597266 ~ 11597518 (+)
G236848 NA non-coding downstream 241041 11614637 ~ 11614917 (+)
G235560 NA other upstream 976717 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3039507 8325126 ~ 8329716 (+)
G233306 NA other upstream 3064146 8304599 ~ 8304949 (+)
G233024 NA other upstream 3759202 7567523 ~ 7609893 (+)
G232870 NA other upstream 4480592 6887912 ~ 6888503 (+)
CI01000054_11648262_11648786 NA other downstream 274383 11647959 ~ 11649495 (+)
G236874 NA other downstream 440092 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1511306 12886994 ~ 12902006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location