G236362


Basic Information

Item Value
gene id G236362
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11507425 ~ 11507904 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268044
AATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGATGTATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCGATTCAAACACTTGGGAGAGCTTCACAATGAGTAGAATGAAGCCAGAGTCAGCGCATCAAGAGTCACCACACTCTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGCACAGTGAACAGTGGTCGAAAATCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTAAAGGAAGN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268044 True 447 lncRNA 0.44 2 11507425 11507904

Neighbor

gene id symbol gene type direction distance location
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 94294 11409254 ~ 11413131 (+)
CI01000054_11289604_11337266 NA coding upstream 170045 11289604 ~ 11337380 (+)
CI01000054_11280613_11285395 NA coding upstream 222030 11280613 ~ 11285395 (+)
CI01000054_11171795_11178974 NA coding upstream 328316 11171731 ~ 11179109 (+)
CI01000054_11162176_11165636 NA coding upstream 341598 11160059 ~ 11165827 (+)
CI01000054_11536181_11537063 NA coding downstream 26853 11534757 ~ 11537164 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 56916 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 92602 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 125055 11632959 ~ 11635103 (+)
CI01000054_11637464_11637950 NA coding downstream 129429 11637333 ~ 11638191 (+)
G236305 NA non-coding upstream 133829 11369095 ~ 11373596 (+)
G236281 NA non-coding upstream 210424 11296149 ~ 11297001 (+)
G236222 NA non-coding upstream 228420 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 263142 11244063 ~ 11244283 (+)
G236249 NA non-coding upstream 274191 11226726 ~ 11233234 (+)
G236373 NA non-coding downstream 41700 11549604 ~ 11550696 (+)
G236822 NA non-coding downstream 89362 11597266 ~ 11597518 (+)
G236848 NA non-coding downstream 106733 11614637 ~ 11614917 (+)
G236849 NA non-coding downstream 108923 11616827 ~ 11617146 (+)
G235560 NA other upstream 1115047 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3177837 8325126 ~ 8329716 (+)
G233306 NA other upstream 3202476 8304599 ~ 8304949 (+)
G233024 NA other upstream 3897532 7567523 ~ 7609893 (+)
G232870 NA other upstream 4618922 6887912 ~ 6888503 (+)
CI01000054_11648262_11648786 NA other downstream 140075 11647959 ~ 11649495 (+)
G236874 NA other downstream 305784 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1376998 12886994 ~ 12902006 (+)

Expression


Co-expression Network