G236728


Basic Information

Item Value
gene id G236728
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11525140 ~ 11527129 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268474
ATCGCTTCAGAGTTTTGGAGATGTTCTTGCCATTATATTCAGCAAAGCATTGGATTTCATCATCTTCAGTCCACTCCTCTGCAGGAACAGAGAGATGAGCACGCGTGAATTCTGTGGCTGAATCAGTGGCGTCTGTCCAGGCTGATTCGGTCCATCCAACATGCTCTTTCTCTCCAATTATCCAGAACACCCGCACTTGAGACGGGATGACTCCGGTCACAAGACACTGCAGTGCTACTGATGATGAGTCAGGTTCTTGTGGTGGGTATAAGATGGATAGTTTTGGTTCCTCAACAGAGTGATCTATTACAGAGATCATCACGTCAAAATGTTATCTGTTATAATGACTGTGACCCATAGAAGTGTTGATGAGATTTAACGTCAGATTTACCTGTTACGATCACCTTGCTTCCACTGCCGATAACAGCCATTGAGTTATGATGGCTAATGCAATAGTACAAACCTGAATCTTTCGGTGTTACATTTGTAAAACTAACAACGCAAGTTTTATCATCATGTTGAAGAAAATCAGACTGAGAGATAGACCTAGCTGCTGTGAGTTTACCAGTCCGTAGGTTCAACTTTTGCCATGTTGCAGCAGTATAGCAGTAAGAAACTTTCTGTTCAAATGTACATGTTAATTTTACAGTGCCACCGACTGAGACGTGTGTGAGGCTCGGTGACTGAGTCAGGATGAACGATCTGCTGCCATTCTGGATGCTGTTACTTGTTTTGATCTAACCACACGGGTTTGAGATGAAAAGAGCAGCATGGTGAGAGAAGAACGGCCAATGCTGAACGCCCACACCTTCGCTTGCAACCGAGTCTGAAACCACCCTGCACCTCAAATACTTCACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268474 True 859 lncRNA 0.44 2 11525140 11527129

Neighbor

gene id symbol gene type direction distance location
CI01000054_11480381_11493272 SEMA4AB coding downstream 31868 11478784 ~ 11493272 (-)
CI01000054_11464968_11474671 NA coding downstream 50438 11464394 ~ 11474702 (-)
CI01000054_11441495_11447523 NA coding downstream 77617 11441430 ~ 11447523 (-)
CI01000054_11387319_11406159 MTX1B, MTX1 coding downstream 118070 11387319 ~ 11407070 (-)
CI01000054_11365718_11380961 THBS3B coding downstream 144179 11362295 ~ 11380961 (-)
CI01000054_11594619_11599264 NA coding upstream 67457 11594586 ~ 11599297 (-)
CI01000054_11699420_11703409 PEX11B coding upstream 171837 11698966 ~ 11703732 (-)
CI01000054_11705281_11711296 RIT1 coding upstream 177452 11704581 ~ 11711296 (-)
CI01000054_11724484_11731711 SYT11A coding upstream 196866 11723995 ~ 11731711 (-)
CI01000054_11758803_11774872 NA coding upstream 231168 11758297 ~ 11774872 (-)
G236734 NA non-coding downstream 17237 11506541 ~ 11507903 (-)
G236779 NA non-coding downstream 92209 11334706 ~ 11432931 (-)
G236715 NA non-coding downstream 111955 11409219 ~ 11413185 (-)
G236705 NA non-coding downstream 190753 11264317 ~ 11334387 (-)
G236731 NA non-coding upstream 1281 11528410 ~ 11529232 (-)
G236806 NA non-coding upstream 13758 11540887 ~ 11541109 (-)
G236807 NA non-coding upstream 16125 11543254 ~ 11543538 (-)
G236808 NA non-coding upstream 18065 11545194 ~ 11545422 (-)
G236810 NA non-coding upstream 32262 11559391 ~ 11559637 (-)
G236748 NA other downstream 229356 11285194 ~ 11295784 (-)
CI01000054_10872970_10881017 SDHAF3 other downstream 643924 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 other downstream 705795 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1657928 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 2039753 9483147 ~ 9484282 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 251761 11778890 ~ 11781880 (-)

Expression


Co-expression Network