G236373


Basic Information

Item Value
gene id G236373
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11549604 ~ 11550696 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268060
ACGGTTCATTTCTTGTGTTTAGTTTTATTCATGATATAACTCTACCTATTACAAAATTGCATAGATTGAACCACAGTTCACTCTTAAGGCCTTTGAACACTGAGTCCGAAAATTTTTGTATGCGTTTTTTCGTATTCGTGATCCTAAAAATTCGTCACGCACAGAGACCTTGCACACTGACTCCGACACGTATTAATGAATCCGTTGCGAAAAAAATCGCAAAACAATACAAAATGGAGTCTTCAAGCAGTGAGCATGATTTAGTTGTCCTCTCTCTTCTTAAAAAGAGAAAAAGAAAGAGGAAATATTGGGTCCATCCAATCCCGAGATTGCATAGAGAGAAAGGAGAGTTCCACCTCATCAAGGAGCTGCGTGATTATCCAGAGTGTTTCAAAGTTTACTTCAGGATGTCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268060 True 416 lncRNA 0.38 2 11549604 11550696

Neighbor

gene id symbol gene type direction distance location
CI01000054_11536181_11537063 NA coding upstream 12440 11534757 ~ 11537164 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 136473 11409254 ~ 11413131 (+)
CI01000054_11289604_11337266 NA coding upstream 212224 11289604 ~ 11337380 (+)
CI01000054_11280613_11285395 NA coding upstream 264209 11280613 ~ 11285395 (+)
CI01000054_11171795_11178974 NA coding upstream 370495 11171731 ~ 11179109 (+)
CI01000054_11564820_11568338 S100V2 coding downstream 14124 11564820 ~ 11568999 (+)
CI01000054_11600741_11608257 NA coding downstream 49810 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 82263 11632959 ~ 11635103 (+)
CI01000054_11637464_11637950 NA coding downstream 86637 11637333 ~ 11638191 (+)
CI01000054_11648262_11648786 NA coding downstream 97263 11647959 ~ 11649495 (+)
G236362 NA non-coding upstream 41700 11507425 ~ 11507904 (+)
G236305 NA non-coding upstream 176008 11369095 ~ 11373596 (+)
G236281 NA non-coding upstream 252603 11296149 ~ 11297001 (+)
G236222 NA non-coding upstream 270599 11277411 ~ 11279005 (+)
G236257 NA non-coding upstream 305321 11244063 ~ 11244283 (+)
G236822 NA non-coding downstream 46570 11597266 ~ 11597518 (+)
G236848 NA non-coding downstream 63941 11614637 ~ 11614917 (+)
G236849 NA non-coding downstream 66131 11616827 ~ 11617146 (+)
G236851 NA non-coding downstream 71909 11622605 ~ 11622853 (+)
G235560 NA other upstream 1157226 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3220016 8325126 ~ 8329716 (+)
G233306 NA other upstream 3244655 8304599 ~ 8304949 (+)
G233024 NA other upstream 3939711 7567523 ~ 7609893 (+)
G232870 NA other upstream 4661101 6887912 ~ 6888503 (+)
G236874 NA other downstream 262992 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1334206 12886994 ~ 12902006 (+)

Expression


Co-expression Network