G236815


Basic Information

Item Value
gene id G236815
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11578372 ~ 11578698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268573
GGACAAATACGTCCACAGAGCTGCCCTGTGGAGGAAAGCAGATCAACTGTTTGTGTGTTTTGGACCGCATAACAGGGGTCGCCCTGCGTCCAAACATATGGTAAGCAAGTGGATAGTCAAGGCTATTTCACTTGCATACGAGGTCTCTGGTCAGCAGTGTCCTTTAGCTGTCAGAGCTCATTCAATCAGGAGTATGGCGTCCTCCAAGGCGTTAATTTCGTGAGTTTCCCTTAAAGAAGTCTGCGATGCAGCCGGTTGGTCCTCGCCTCTCACTTTTGTGAGGTACTATGACCTTGACCTGGACGCGGCTCCAGGGTCTGCAGTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU268573 True 327 lncRNA 0.51 1 11578372 11578698

Neighbor

gene id symbol gene type direction distance location
CI01000054_11480381_11493272 SEMA4AB coding downstream 85100 11478784 ~ 11493272 (-)
CI01000054_11464968_11474671 NA coding downstream 103670 11464394 ~ 11474702 (-)
CI01000054_11441495_11447523 NA coding downstream 130849 11441430 ~ 11447523 (-)
CI01000054_11387319_11406159 MTX1B, MTX1 coding downstream 171302 11387319 ~ 11407070 (-)
CI01000054_11365718_11380961 THBS3B coding downstream 197411 11362295 ~ 11380961 (-)
CI01000054_11594619_11599264 NA coding upstream 15888 11594586 ~ 11599297 (-)
CI01000054_11699420_11703409 PEX11B coding upstream 120268 11698966 ~ 11703732 (-)
CI01000054_11705281_11711296 RIT1 coding upstream 125883 11704581 ~ 11711296 (-)
CI01000054_11724484_11731711 SYT11A coding upstream 145297 11723995 ~ 11731711 (-)
CI01000054_11758803_11774872 NA coding upstream 179599 11758297 ~ 11774872 (-)
G236810 NA non-coding downstream 18735 11559391 ~ 11559637 (-)
G236808 NA non-coding downstream 32950 11545194 ~ 11545422 (-)
G236807 NA non-coding downstream 34834 11543254 ~ 11543538 (-)
G236806 NA non-coding downstream 37263 11540887 ~ 11541109 (-)
G236731 NA non-coding downstream 49140 11528410 ~ 11529232 (-)
G237125 NA non-coding upstream 35845 11614543 ~ 11614907 (-)
G237079 NA non-coding upstream 203902 11782600 ~ 11789638 (-)
CI01000054_11873443_11903635 SEPT7 non-coding upstream 323352 11872998 ~ 11904256 (-)
G237087 NA non-coding upstream 330735 11909433 ~ 11911150 (-)
G237101 NA non-coding upstream 378362 11957060 ~ 11958114 (-)
G236748 NA other downstream 282588 11285194 ~ 11295784 (-)
CI01000054_10872970_10881017 SDHAF3 other downstream 697156 10871104 ~ 10881495 (-)
CI01000054_10817235_10819181 TAC1 other downstream 759027 10816015 ~ 10819362 (-)
CI01000054_09864693_09866871 PPP1R11 other downstream 1711160 9863321 ~ 9867212 (-)
CI01000054_09483912_09484282 MRPL36 other downstream 2092985 9483147 ~ 9484282 (-)
CI01000054_11780397_11781842 SNAPIN other upstream 200192 11778890 ~ 11781880 (-)

Expression


Co-expression Network