G236822


Basic Information

Item Value
gene id G236822
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11597266 ~ 11597518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268583
AGTAAATTCAGTATTGATTCATTCCGTTGTAAGAATCAATAGTTATTAATTTAGTTAATTTATCTATATCAGCACTGAAGTAAACAGTGATGTCATCATCCAGCTCAGTTCAGTTCGCATAAAATGGTGTCAATGCAGGCAGATCAAAACACTGTTGAATATCAAATGTCAAGTGTCCCCAACTTATTACTAACATTAACTGATGGTAAAGAGAGAGCGCATGCACTTGAGTTGCATGCTCTTGATGGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268583 True 253 lncRNA 0.36 1 11597266 11597518

Neighbor

gene id symbol gene type direction distance location
CI01000054_11564820_11568338 S100V2 coding upstream 28816 11564820 ~ 11568999 (+)
CI01000054_11536181_11537063 NA coding upstream 60102 11534757 ~ 11537164 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 184135 11409254 ~ 11413131 (+)
CI01000054_11289604_11337266 NA coding upstream 259886 11289604 ~ 11337380 (+)
CI01000054_11280613_11285395 NA coding upstream 311871 11280613 ~ 11285395 (+)
CI01000054_11600741_11608257 NA coding downstream 2988 11600506 ~ 11608390 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 35441 11632959 ~ 11635103 (+)
CI01000054_11637464_11637950 NA coding downstream 39815 11637333 ~ 11638191 (+)
CI01000054_11648262_11648786 NA coding downstream 50441 11647959 ~ 11649495 (+)
CI01000054_11659093_11663413 THAP7 coding downstream 61575 11659093 ~ 11663607 (+)
G236373 NA non-coding upstream 46570 11549604 ~ 11550696 (+)
G236362 NA non-coding upstream 89362 11507425 ~ 11507904 (+)
G236305 NA non-coding upstream 223670 11369095 ~ 11373596 (+)
G236281 NA non-coding upstream 300265 11296149 ~ 11297001 (+)
G236222 NA non-coding upstream 318261 11277411 ~ 11279005 (+)
G236848 NA non-coding downstream 17119 11614637 ~ 11614917 (+)
G236849 NA non-coding downstream 19309 11616827 ~ 11617146 (+)
G236851 NA non-coding downstream 25087 11622605 ~ 11622853 (+)
G236852 NA non-coding downstream 30768 11628286 ~ 11628516 (+)
G235560 NA other upstream 1204888 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3267678 8325126 ~ 8329716 (+)
G233306 NA other upstream 3292317 8304599 ~ 8304949 (+)
G233024 NA other upstream 3987373 7567523 ~ 7609893 (+)
G236874 NA other downstream 216170 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1287384 12886994 ~ 12902006 (+)

Expression


Co-expression Network