G236853


Basic Information

Item Value
gene id G236853
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11628707 ~ 11629027 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU268618
GGAAATACTCAATAAAGTAGGCTAACTACGCTACCTCAGATGGTTGAATGGTTGGATTCCACAACTGGTAAAATAAAACATATATAAGACAATACAACATTTTCTGTGGGAGCCATACAATTTACTGGTGACTTAATTTAAAAAAAACTGTTCTATTGCGCTTCTGATTTGGCAGTGAAATTCGCCGATTTTGGGTGTGTAAGATGTGAAGGATTCTATGGTCCAGTTAGTATTTTCACCCCATAATGGCGGCCGTGCTACCGGAGCGCCATCTAGTGGCTGTTACCCAAAAAGTATCAAAGTGTCGCCTCTTGGGTTCTA

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268618 True 321 lncRNA 0.40 1 11628707 11629027

Neighbor

gene id symbol gene type direction distance location
CI01000054_11600741_11608257 NA coding upstream 20345 11600506 ~ 11608390 (+)
CI01000054_11564820_11568338 S100V2 coding upstream 60257 11564820 ~ 11568999 (+)
CI01000054_11536181_11537063 NA coding upstream 91543 11534757 ~ 11537164 (+)
CI01000054_11409512_11412290 TXNIP, TXNIPA coding upstream 215576 11409254 ~ 11413131 (+)
CI01000054_11289604_11337266 NA coding upstream 291327 11289604 ~ 11337380 (+)
CI01000054_11633235_11635069 PRF1.8 coding downstream 3932 11632959 ~ 11635103 (+)
CI01000054_11637464_11637950 NA coding downstream 8306 11637333 ~ 11638191 (+)
CI01000054_11648262_11648786 NA coding downstream 18932 11647959 ~ 11649495 (+)
CI01000054_11659093_11663413 THAP7 coding downstream 30066 11659093 ~ 11663607 (+)
CI01000054_11666236_11693431 NA coding downstream 37209 11666236 ~ 11693479 (+)
G236852 NA non-coding upstream 191 11628286 ~ 11628516 (+)
G236851 NA non-coding upstream 5854 11622605 ~ 11622853 (+)
G236849 NA non-coding upstream 11561 11616827 ~ 11617146 (+)
G236848 NA non-coding upstream 13790 11614637 ~ 11614917 (+)
G236857 NA non-coding downstream 10877 11639904 ~ 11640550 (+)
G236924 NA non-coding downstream 67832 11696859 ~ 11697087 (+)
G236942 NA non-coding downstream 122487 11751514 ~ 11751727 (+)
G236972 NA non-coding downstream 225946 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 269203 11898230 ~ 11907383 (+)
G235560 NA other upstream 1236329 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3299119 8325126 ~ 8329716 (+)
G233306 NA other upstream 3323758 8304599 ~ 8304949 (+)
G233024 NA other upstream 4018814 7567523 ~ 7609893 (+)
G236874 NA other downstream 184661 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1255875 12886994 ~ 12902006 (+)

Expression


Co-expression Network