G236857



Basic Information


Item Value
gene id G236857
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 11639904 ~ 11640550 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU268622
ATGCCCGACCAGTTGCCCACAGTTTTACCTGGGCTAGACGGTGTGTCTGAGGTATCTGAGCACTAGGTCCCTGTGTGCACACAACAGATCTCAAGAGCTAGAATGAGCCAGCCATTGAGATATTTGAGAAAGCGAATACCCACTTCCCTTAATGGGGCAAGGGCAGCTTCCACGACTTTCATAAAGATGAAAGGTGACAGGGACTGCCAGAAGGGAGGACCTGGTACTGATATGCCTGACCCTCGAAAGCAAATCGAAGGAAAGGTCTGTGTCGAGGTAGAATCAAGACATGGAAGTATGTGTCCTTCAGGTCTATTGCTGCTAGGCCCTCCAACACAAATTTGTGATCACCTCAGCCCCCTTTAAAACTAATATGAAAACAGCGACAGGCTTCAGCTCCTCCCCGTCTTGTCTGCTTTATTCAGCAAGTTCTTCAGTCTGTAGCAGCGCAGTGTCAGAAGCAGAGATATGTGCATAATGTGATGCGGGAGCAATACAACATGGTTTCCCATCCACTGTAAAGTGCTGCATTCTCCCCCTTTCACACTTCTATGGAAAATTTCTGCCATTGGAATAAAAAAATAATAAAAGATAATTGTGACTTTTTACAATTTTCACAATTCTGACTTTTTTTAATTACAATTGTG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU268622 True 647 lncRNA 0.45 1 11639904 11640550

Neighbor


gene id symbol gene type direction distance location
CI01000054_11637464_11637950 NA coding upstream 1713 11637333 ~ 11638191 (+)
CI01000054_11633235_11635069 PRF1.8 coding upstream 4801 11632959 ~ 11635103 (+)
CI01000054_11600741_11608257 NA coding upstream 31542 11600506 ~ 11608390 (+)
CI01000054_11564820_11568338 S100V2 coding upstream 71454 11564820 ~ 11568999 (+)
CI01000054_11536181_11537063 NA coding upstream 102740 11534757 ~ 11537164 (+)
CI01000054_11648262_11648786 NA coding downstream 7409 11647959 ~ 11649495 (+)
CI01000054_11659093_11663413 THAP7 coding downstream 18543 11659093 ~ 11663607 (+)
CI01000054_11666236_11693431 NA coding downstream 25686 11666236 ~ 11693479 (+)
CI01000054_11783772_11784302 NA coding downstream 143222 11783772 ~ 11785006 (+)
CI01000054_11785504_11789031 CHTOP coding downstream 144764 11785314 ~ 11789697 (+)
G236853 NA non-coding upstream 10877 11628707 ~ 11629027 (+)
G236852 NA non-coding upstream 11388 11628286 ~ 11628516 (+)
G236851 NA non-coding upstream 17051 11622605 ~ 11622853 (+)
G236849 NA non-coding upstream 22758 11616827 ~ 11617146 (+)
G236848 NA non-coding upstream 24987 11614637 ~ 11614917 (+)
G236924 NA non-coding downstream 56309 11696859 ~ 11697087 (+)
G236942 NA non-coding downstream 110964 11751514 ~ 11751727 (+)
G236972 NA non-coding downstream 214423 11854973 ~ 11855763 (+)
G236886 NA non-coding downstream 257680 11898230 ~ 11907383 (+)
G236895 NA non-coding downstream 316522 11957072 ~ 11958097 (+)
G235560 NA other upstream 1247526 10388136 ~ 10392378 (+)
CI01000054_08325126_08329621 HPCAL4, VSNL1, VSNL1.S other upstream 3310316 8325126 ~ 8329716 (+)
G233306 NA other upstream 3334955 8304599 ~ 8304949 (+)
G236874 NA other downstream 173138 11813688 ~ 11816475 (+)
CI01000054_12887165_12901376 NA other downstream 1244352 12886994 ~ 12902006 (+)

Expression



Co-expression Network